Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07049 | Canola | nucleus | 89.3 | 93.53 |
| CDY07629 | Canola | nucleus | 86.83 | 79.92 |
| CDX69783 | Canola | nucleus | 59.26 | 76.19 |
| CDY60337 | Canola | nucleus | 82.72 | 76.14 |
| CDX97081 | Canola | nucleus | 57.2 | 75.54 |
| AT2G40060.1 | Thale cress | nucleus | 74.07 | 69.77 |
| CDX95307 | Canola | nucleus | 44.44 | 43.03 |
| VIT_13s0067g00550.t01 | Wine grape | nucleus | 55.97 | 42.63 |
| CDY23170 | Canola | nucleus | 44.44 | 42.19 |
| CDX81980 | Canola | nucleus | 50.62 | 38.56 |
| CDY20508 | Canola | nucleus | 74.49 | 38.35 |
| CDY13859 | Canola | nucleus | 48.56 | 37.34 |
| CDY31939 | Canola | nucleus | 27.98 | 34.34 |
| CDY05790 | Canola | nucleus | 22.22 | 32.14 |
Protein Annotations
| MapMan:22.1.1.2 | GO:A0A078JBC6 | UniProt:A0A078JBC6 | EnsemblPlants:CDY61712 | ProteinID:CDY61712 | ProteinID:CDY61712.1 |
| InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 |
| GO:GO:0030659 | GO:GO:0031410 | EnsemblPlantsGene:GSBRNA2T00034256001 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF19 |
| UniParc:UPI0004EE01D4 | SEG:seg | : | : | : | : |
Description
BnaC04g56740DClathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A078JBC6]
Coordinates
chrLK034030:-:25492..26910
Molecular Weight (calculated)
27031.6 Da
IEP (calculated)
5.024
GRAVY (calculated)
-0.944
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVFEDSFVI VGDDASESVP VSASLDDSID DVFAAPSSDY AAYSNGDDVF GSNGGGNDGP ILPPPSEMES DEGRALREWR RQNANQLEEK EKREKEMRNQ
101: IIEEANQFKE DFHKKRELAC ENNKAANREK EKLYVETQEK FYAEASKNYW KAIAELVPKE VPTIEKRRGK KEQADTKKAT VSVIQGPKPG KPTDLARMRQ
201: ILLKLKQNPP PHLKLTPQQP PAEAAAPPKN VPETKPTEAV AAA
101: IIEEANQFKE DFHKKRELAC ENNKAANREK EKLYVETQEK FYAEASKNYW KAIAELVPKE VPTIEKRRGK KEQADTKKAT VSVIQGPKPG KPTDLARMRQ
201: ILLKLKQNPP PHLKLTPQQP PAEAAAPPKN VPETKPTEAV AAA
001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
Arabidopsis Description
CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.