Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23170 | Canola | nucleus | 90.84 | 89.06 |
| AT3G51890.1 | Thale cress | nucleus | 65.74 | 63.95 |
| CDX69783 | Canola | nucleus | 41.04 | 54.5 |
| CDX97081 | Canola | nucleus | 39.84 | 54.35 |
| VIT_08s0007g02140.t01 | Wine grape | nucleus | 22.31 | 49.12 |
| CDY07049 | Canola | nucleus | 43.03 | 46.55 |
| Solyc09g014450.2.1 | Tomato | plastid | 43.43 | 46.19 |
| CDY61712 | Canola | nucleus | 43.03 | 44.44 |
| PGSC0003DMT400021919 | Potato | mitochondrion | 40.64 | 43.22 |
| KRH75865 | Soybean | plastid | 44.62 | 43.08 |
| CDY07629 | Canola | nucleus | 44.22 | 42.05 |
| CDY60337 | Canola | nucleus | 43.82 | 41.67 |
| CDX81980 | Canola | nucleus | 45.42 | 35.74 |
| CDY13859 | Canola | nucleus | 44.62 | 35.44 |
| CDY31939 | Canola | nucleus | 25.9 | 32.83 |
| CDY05790 | Canola | nucleus | 18.73 | 27.98 |
| CDY20508 | Canola | nucleus | 42.23 | 22.46 |
Protein Annotations
| MapMan:22.1.1.2 | GO:A0A078E2D0 | EnsemblPlants:CDX95307 | ProteinID:CDX95307 | ProteinID:CDX95307.1 | InterPro:Clathrin_L-chain |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 | EnsemblPlantsGene:GSBRNA2T00100968001 | PFAM:PF01086 |
| PANTHER:PTHR10639 | PANTHER:PTHR10639:SF19 | UniParc:UPI0004EE0F70 | SEG:seg | : | : |
Description
BnaC04g28510D
Coordinates
chrLK031888:-:109501..111163
Molecular Weight (calculated)
28246.0 Da
IEP (calculated)
7.653
GRAVY (calculated)
-1.070
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSLGNDDS QLGESNRSAV VDGGDGGNYT AYESRFQSQR FDSSFSNFEK DLAGGGDSSP YSNQDDISSP QRELPETQSP PLKNSSADTN GPILPPPSVM
101: EKEEGFALRE WRRLNALRLE EKEKKEKEMV QQIIEAAEQY KAEFYSKRSI TIENNKKTNR EKEKLFLESQ EKFYAEADKN SWKAIAELIP REVPVLEKKG
201: KKKQASVTVI QGPKPGKPTD LSRMRQVITR LKHNPPSHMK PKVPTPSEVD P
101: EKEEGFALRE WRRLNALRLE EKEKKEKEMV QQIIEAAEQY KAEFYSKRSI TIENNKKTNR EKEKLFLESQ EKFYAEADKN SWKAIAELIP REVPVLEKKG
201: KKKQASVTVI QGPKPGKPTD LSRMRQVITR LKHNPPSHMK PKVPTPSEVD P
001: MSSTLSNEES GLGDSNRSTE VDGGDGGNFT AYESRFQSQR FDSSFSNFDS QPEKESDLPC GDSSPRPETQ SPPSINSFDD TNDSILPPPS AMEKEEGFAL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
Arabidopsis Description
Clathrin light chain 3 [Source:UniProtKB/Swiss-Prot;Acc:F4J5M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.