Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036500.1-P | Field mustard | nucleus | 89.9 | 84.76 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 36.36 | 38.71 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 33.33 | 37.29 |
| CDX69783 | Canola | nucleus | 31.82 | 33.33 |
| CDX81980 | Canola | nucleus | 53.54 | 33.23 |
| CDY13859 | Canola | nucleus | 53.03 | 33.23 |
| CDY05790 | Canola | nucleus | 27.78 | 32.74 |
| CDX97081 | Canola | nucleus | 28.79 | 30.98 |
| TraesCSU01G218200.1 | Wheat | nucleus | 31.82 | 30.29 |
| AT2G20760.1 | Thale cress | nucleus | 51.52 | 30.18 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 14.14 | 28.57 |
| CDY07049 | Canola | nucleus | 33.33 | 28.45 |
| CDY61712 | Canola | nucleus | 34.34 | 27.98 |
| Zm00001d014898_P001 | Maize | plasma membrane | 39.9 | 27.82 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 40.4 | 27.49 |
| EER89016 | Sorghum | nucleus | 38.89 | 27.02 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 40.4 | 26.58 |
| CDY07629 | Canola | nucleus | 34.85 | 26.14 |
| KRH26934 | Soybean | nucleus | 42.42 | 26.01 |
| KRH22403 | Soybean | nucleus | 42.93 | 25.91 |
| CDX95307 | Canola | nucleus | 32.83 | 25.9 |
| TraesCSU01G101000.3 | Wheat | nucleus | 40.4 | 25.81 |
| CDY60337 | Canola | nucleus | 34.34 | 25.76 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 36.87 | 25.52 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 39.9 | 25.48 |
| CDY23170 | Canola | nucleus | 32.83 | 25.39 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 39.39 | 25.08 |
| GSMUA_Achr11P... | Banana | nucleus | 40.4 | 24.92 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 38.89 | 24.84 |
| EES11661 | Sorghum | nucleus | 37.37 | 24.58 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 39.39 | 24.45 |
| Zm00001d001814_P001 | Maize | nucleus | 36.87 | 24.41 |
| Zm00001d026630_P001 | Maize | plasma membrane | 36.87 | 23.93 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 39.9 | 22.83 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 39.39 | 22.35 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 39.39 | 21.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.39 | 21.14 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 40.91 | 20.56 |
| Solyc07g054180.2.1 | Tomato | nucleus | 41.92 | 19.95 |
| PGSC0003DMT400047261 | Potato | extracellular | 42.42 | 19.27 |
| CDY20508 | Canola | nucleus | 33.33 | 13.98 |
Protein Annotations
| MapMan:22.1.1.2 | GO:A0A078H3F1 | UniProt:A0A078H3F1 | EnsemblPlants:CDY31939 | ProteinID:CDY31939 | ProteinID:CDY31939.1 |
| InterPro:Clathrin_L-chain | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 | EnsemblPlantsGene:GSBRNA2T00050717001 | PANTHER:PTHR10639 |
| PANTHER:PTHR10639:SF8 | UniParc:UPI0004EE313E | SEG:seg | : | : | : |
Description
BnaA07g00560DBnaA07g00560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3F1]
Coordinates
chrLK032283:+:43302..44389
Molecular Weight (calculated)
23119.6 Da
IEP (calculated)
11.052
GRAVY (calculated)
-1.548
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFDEGDFP AQTTHSPSQP DNFFMSDHNI SEAHPPPSTQ HSLNRDGDGD DDFGSENNPA SPQPCQRQRR RWRWRRKRKR RRCAIKKAFY EKREKTIETK
101: KADNREREKS ELISREVPNI DKKRGKNDPD KKPSMIVIQG PKPGKPTDLG RMRQIFLKLK TNPPPHMMPP PPPAKMPKTE NLQRKQRGQK KNMLHLKQ
101: KADNREREKS ELISREVPNI DKKRGKNDPD KKPSMIVIQG PKPGKPTDLG RMRQIFLKLK TNPPPHMMPP PPPAKMPKTE NLQRKQRGQK KNMLHLKQ
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.