Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH26934 | Soybean | nucleus | 75.61 | 76.78 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 31.4 | 58.19 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 32.62 | 57.53 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 15.24 | 51.02 |
| AT2G20760.1 | Thale cress | nucleus | 51.52 | 50.0 |
| CDX81980 | Canola | nucleus | 47.87 | 49.22 |
| KRH75865 | Soybean | plastid | 37.5 | 47.31 |
| KRH10839 | Soybean | nucleus | 46.04 | 46.89 |
| KRH20480 | Soybean | endoplasmic reticulum | 43.29 | 46.86 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 40.85 | 46.85 |
| CDY13859 | Canola | nucleus | 45.12 | 46.84 |
| Bra031138.1-P | Field mustard | nucleus | 45.12 | 46.84 |
| KRH50011 | Soybean | nucleus | 44.21 | 46.77 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 41.16 | 46.39 |
| KRH21478 | Soybean | nucleus | 44.21 | 46.33 |
| TraesCSU01G218200.1 | Wheat | nucleus | 29.27 | 46.15 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 42.07 | 45.85 |
| Zm00001d014898_P001 | Maize | plasma membrane | 38.72 | 44.72 |
| EER89016 | Sorghum | nucleus | 38.41 | 44.21 |
| CDY31939 | Canola | nucleus | 25.91 | 42.93 |
| EES11661 | Sorghum | nucleus | 39.33 | 42.86 |
| Zm00001d001814_P001 | Maize | nucleus | 39.02 | 42.81 |
| GSMUA_Achr11P... | Banana | nucleus | 41.46 | 42.37 |
| Zm00001d026630_P001 | Maize | plasma membrane | 38.41 | 41.31 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 39.63 | 40.75 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 38.41 | 40.65 |
| TraesCSU01G101000.3 | Wheat | nucleus | 38.41 | 40.65 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 38.11 | 40.32 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 37.8 | 39.87 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 41.46 | 38.97 |
| Bra036500.1-P | Field mustard | nucleus | 24.7 | 38.57 |
| Solyc07g054180.2.1 | Tomato | nucleus | 48.17 | 37.98 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.77 | 37.13 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 39.02 | 36.99 |
| PGSC0003DMT400047261 | Potato | extracellular | 47.87 | 36.01 |
| CDY05790 | Canola | nucleus | 17.68 | 34.52 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 40.55 | 33.76 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 35.06 | 31.77 |
Protein Annotations
| EntrezGene:100808804 | MapMan:22.1.1.2 | EMBL:ACUP02008411 | InterPro:Clathrin_L-chain | ncoils:Coil | EnsemblPlantsGene:GLYMA_13G298200 |
| GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030125 | GO:GO:0030130 |
| GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032050 | GO:GO:0072583 | UniProt:I1M3U1 |
| EnsemblPlants:KRH22403 | ProteinID:KRH22403 | ProteinID:KRH22403.1 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF8 |
| UniParc:UPI000233BEF3 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr13:-:39676082..39678432
Molecular Weight (calculated)
37257.9 Da
IEP (calculated)
5.644
GRAVY (calculated)
-1.366
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFDSFEEQ SHQSPTRGPF EDDNSYTDMG MGYESHQHYD YDDQHPQFNN VDPNNNNFSD NAHSPPVYGF GISTPNPDFV SPFEPAAADD TTFSSDGPML
101: PDPSQMQEEG RARREWRRLN AIHLEEKETR EKEMRNQIIK EAEEYKEAFY EKRKVNCEKN KENNREREKI HLANQEKFHK EAHNHYWKAI AEIIPREVPN
201: IEKRRGKKEG ENKPSVHVIQ GPKPGKPTDL ARMRQMILKL KQNPPSHMMP PPPKEEKDAK EGKDGKDNKN AKEGKDDKDV KSSTPTATTG VVENKPSSPA
301: KDVAANGEPQ DPAIVEGEQV ASSEPKAA
101: PDPSQMQEEG RARREWRRLN AIHLEEKETR EKEMRNQIIK EAEEYKEAFY EKRKVNCEKN KENNREREKI HLANQEKFHK EAHNHYWKAI AEIIPREVPN
201: IEKRRGKKEG ENKPSVHVIQ GPKPGKPTDL ARMRQMILKL KQNPPSHMMP PPPKEEKDAK EGKDGKDNKN AKEGKDDKDV KSSTPTATTG VVENKPSSPA
301: KDVAANGEPQ DPAIVEGEQV ASSEPKAA
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.