Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX81980 | Canola | nucleus | 60.95 | 64.58 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 34.62 | 62.9 |
| Bra031138.1-P | Field mustard | nucleus | 58.58 | 62.66 |
| CDY13859 | Canola | nucleus | 58.58 | 62.66 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 31.36 | 59.89 |
| KRH22403 | Soybean | nucleus | 50.0 | 51.52 |
| CDY31939 | Canola | nucleus | 30.18 | 51.52 |
| KRH26934 | Soybean | nucleus | 47.34 | 49.54 |
| TraesCSU01G218200.1 | Wheat | nucleus | 30.18 | 49.04 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 13.91 | 47.96 |
| Zm00001d014898_P001 | Maize | plasma membrane | 39.94 | 47.54 |
| EER89016 | Sorghum | nucleus | 39.65 | 47.02 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 40.24 | 46.74 |
| Bra036500.1-P | Field mustard | nucleus | 28.99 | 46.67 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 39.35 | 46.5 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 40.83 | 45.85 |
| EES11661 | Sorghum | nucleus | 40.53 | 45.51 |
| AT2G40060.1 | Thale cress | nucleus | 34.02 | 44.57 |
| Zm00001d001814_P001 | Maize | nucleus | 39.35 | 44.48 |
| GSMUA_Achr11P... | Banana | nucleus | 41.72 | 43.93 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 40.83 | 43.26 |
| Zm00001d026630_P001 | Maize | plasma membrane | 38.46 | 42.62 |
| TraesCSU01G101000.3 | Wheat | nucleus | 38.46 | 41.94 |
| AT3G51890.1 | Thale cress | nucleus | 31.95 | 41.86 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 38.46 | 41.8 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 37.87 | 41.29 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 37.57 | 40.97 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 42.01 | 40.69 |
| GSMUA_AchrUn_... | Banana | nucleus | 42.9 | 39.3 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 38.76 | 37.86 |
| Solyc07g054180.2.1 | Tomato | nucleus | 45.86 | 37.26 |
| CDY05790 | Canola | nucleus | 18.34 | 36.9 |
| PGSC0003DMT400047261 | Potato | extracellular | 46.75 | 36.24 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 38.76 | 36.19 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 38.76 | 33.25 |
Protein Annotations
| MapMan:22.1.1.2 | EntrezGene:816605 | ProteinID:AAD20919.1 | ProteinID:AEC07067.1 | ArrayExpress:AT2G20760 | EnsemblPlantsGene:AT2G20760 |
| RefSeq:AT2G20760 | TAIR:AT2G20760 | RefSeq:AT2G20760-TAIR-G | EnsemblPlants:AT2G20760.1 | TAIR:AT2G20760.1 | EMBL:AY057515 |
| EMBL:AY057654 | EMBL:AY084472 | Unigene:At.23177 | EMBL:BT025885 | InterPro:Clathrin_L-chain | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0005905 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030125 |
| GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032050 | GO:GO:0072583 |
| RefSeq:NP_565484.1 | PFAM:PF01086 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10639 |
| PANTHER:PTHR10639:SF8 | UniProt:Q9SKU1 | UniParc:UPI00000A1B1C | SEG:seg | : | : |
Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
Coordinates
chr2:-:8942750..8945244
Molecular Weight (calculated)
37226.9 Da
IEP (calculated)
6.147
GRAVY (calculated)
-1.298
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.