Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031138.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX81980 | Canola | nucleus | 81.65 | 80.88 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 37.66 | 63.98 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 33.86 | 60.45 |
| AT2G20760.1 | Thale cress | nucleus | 62.66 | 58.58 |
| CDX69783 | Canola | nucleus | 33.54 | 56.08 |
| CDY31939 | Canola | nucleus | 33.23 | 53.03 |
| TraesCSU01G218200.1 | Wheat | nucleus | 34.49 | 52.4 |
| CDX97081 | Canola | nucleus | 30.38 | 52.17 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 15.51 | 50.0 |
| CDY07049 | Canola | nucleus | 36.39 | 49.57 |
| CDY61712 | Canola | nucleus | 37.34 | 48.56 |
| Zm00001d014898_P001 | Maize | plasma membrane | 43.04 | 47.89 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 43.99 | 47.77 |
| CDY05790 | Canola | nucleus | 25.32 | 47.62 |
| CDY07629 | Canola | nucleus | 38.92 | 46.59 |
| EER89016 | Sorghum | nucleus | 41.77 | 46.32 |
| TraesCSU01G101000.3 | Wheat | nucleus | 44.62 | 45.48 |
| KRH22403 | Soybean | nucleus | 46.84 | 45.12 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 40.82 | 45.1 |
| GSMUA_Achr11P... | Banana | nucleus | 45.57 | 44.86 |
| CDY60337 | Canola | nucleus | 37.34 | 44.7 |
| CDX95307 | Canola | nucleus | 35.44 | 44.62 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 44.94 | 44.51 |
| Zm00001d001814_P001 | Maize | nucleus | 42.09 | 44.48 |
| KRH26934 | Soybean | nucleus | 45.25 | 44.27 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 42.09 | 44.19 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 42.41 | 43.23 |
| CDY23170 | Canola | nucleus | 34.81 | 42.97 |
| EES11661 | Sorghum | nucleus | 40.51 | 42.52 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 41.46 | 42.26 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 41.46 | 42.12 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 45.89 | 41.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 45.57 | 39.02 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 42.72 | 39.02 |
| Zm00001d026630_P001 | Maize | plasma membrane | 37.03 | 38.36 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 42.41 | 37.02 |
| Solyc07g054180.2.1 | Tomato | nucleus | 48.1 | 36.54 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 44.94 | 36.04 |
| PGSC0003DMT400047261 | Potato | extracellular | 49.05 | 35.55 |
| CDY20508 | Canola | nucleus | 36.08 | 24.15 |
Protein Annotations
| MapMan:22.1.1.2 | GO:A0A078FLR4 | UniProt:A0A078FLR4 | EnsemblPlants:CDY13859 | ProteinID:CDY13859 | ProteinID:CDY13859.1 |
| InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 |
| GO:GO:0030659 | GO:GO:0031410 | EnsemblPlantsGene:GSBRNA2T00078306001 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF8 |
| UniParc:UPI00025428FE | SEG:seg | : | : | : | : |
Description
BnaA09g43610DClathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A078FLR4]
Coordinates
chrLK032038:+:683771..685404
Molecular Weight (calculated)
34741.3 Da
IEP (calculated)
5.802
GRAVY (calculated)
-1.191
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MATFDDGDFP AAQTHSPTEH DDSFMSYENF SEAPPSAGFS SFNGDGSENP ASPNGYGFAA ASSPNGNGDA GIFASDGPTL PDPNEMREEG FQRREWRRQN
101: ALHLEEKEKK EKEMRNQLIA EADEYKKAFY EKREKTIETN KADNREREKL YWVNQEKFHK EVDKHYWKAI AELIPREVPN IEKKRGKKDP DKKPSVMVIQ
201: GPKPGKPTDL GRMRQIFLKL KTNPPPHMMP PPPPPAKDAK DAKEGKDAKG GKDAKDGKPA AEKKAPEAET KAAEEKPASP AKDASAETAK PEAAVTAAAS
301: GEGEKPVVEA EGAKAE
101: ALHLEEKEKK EKEMRNQLIA EADEYKKAFY EKREKTIETN KADNREREKL YWVNQEKFHK EVDKHYWKAI AELIPREVPN IEKKRGKKDP DKKPSVMVIQ
201: GPKPGKPTDL GRMRQIFLKL KTNPPPHMMP PPPPPAKDAK DAKEGKDAKG GKDAKDGKPA AEKKAPEAET KAAEEKPASP AKDASAETAK PEAAVTAAAS
301: GEGEKPVVEA EGAKAE
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.