Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033472.1-P | Field mustard | nucleus | 94.53 | 96.41 |
| CDX95307 | Canola | nucleus | 89.06 | 90.84 |
| AT3G51890.1 | Thale cress | nucleus | 67.58 | 67.05 |
| CDX69783 | Canola | nucleus | 40.62 | 55.03 |
| CDX97081 | Canola | nucleus | 39.06 | 54.35 |
| VIT_08s0007g02140.t01 | Wine grape | nucleus | 21.09 | 47.37 |
| CDY07049 | Canola | nucleus | 42.19 | 46.55 |
| Solyc09g014450.2.1 | Tomato | plastid | 42.19 | 45.76 |
| PGSC0003DMT400021919 | Potato | mitochondrion | 41.41 | 44.92 |
| CDY61712 | Canola | nucleus | 42.19 | 44.44 |
| KRH75865 | Soybean | plastid | 43.75 | 43.08 |
| CDY07629 | Canola | nucleus | 43.36 | 42.05 |
| CDY60337 | Canola | nucleus | 42.97 | 41.67 |
| CDX81980 | Canola | nucleus | 43.75 | 35.11 |
| CDY13859 | Canola | nucleus | 42.97 | 34.81 |
| CDY31939 | Canola | nucleus | 25.39 | 32.83 |
| CDY05790 | Canola | nucleus | 18.36 | 27.98 |
| CDY20508 | Canola | nucleus | 41.02 | 22.25 |
Protein Annotations
| MapMan:22.1.1.2 | GO:A0A078G9R6 | UniProt:A0A078G9R6 | EnsemblPlants:CDY23170 | ProteinID:CDY23170 | ProteinID:CDY23170.1 |
| InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 |
| GO:GO:0030659 | GO:GO:0031410 | EnsemblPlantsGene:GSBRNA2T00021703001 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF19 |
| UniParc:UPI0004EDFE8F | SEG:seg | : | : | : | : |
Description
BnaA04g05890DClathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A078G9R6]
Coordinates
chrLK032141:-:111696..113027
Molecular Weight (calculated)
28798.5 Da
IEP (calculated)
5.594
GRAVY (calculated)
-1.094
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSLSNDDS QLGESNRSAE VDGGEGGNYT AYESRFQSQR FDSSFSNFEK DLAGGGDSSP YSNQEDISSP QRELPETQSP PLKNSSDDTN GPILPPPSAM
101: EKEEGFALRE WRRLNALRLE EKEKKEKEMV QEIIEAAEQY KAEFYSKRSI TIENNRKTNR EKEKLFLESQ EKFYAEADKN SWKAIAELIP REVPVLEKKG
201: KKKQASVTVI QGPKPGKPTD LSRMRQVITR LKHNPPSHMK PKVPTASESG PVSETV
101: EKEEGFALRE WRRLNALRLE EKEKKEKEMV QEIIEAAEQY KAEFYSKRSI TIENNRKTNR EKEKLFLESQ EKFYAEADKN SWKAIAELIP REVPVLEKKG
201: KKKQASVTVI QGPKPGKPTD LSRMRQVITR LKHNPPSHMK PKVPTASESG PVSETV
001: MSSTLSNEES GLGDSNRSTE VDGGDGGNFT AYESRFQSQR FDSSFSNFDS QPEKESDLPC GDSSPRPETQ SPPSINSFDD TNDSILPPPS AMEKEEGFAL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
Arabidopsis Description
Clathrin light chain 3 [Source:UniProtKB/Swiss-Prot;Acc:F4J5M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.