Factsheet for Solyc09g014450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021919	Potato	mitochondrion	79.24	79.24
VIT_08s0007g02140.t01	Wine grape	nucleus	24.15	50.0
KRH75865	Soybean	plastid	50.0	45.38
AT3G51890.1	Thale cress	nucleus	49.15	44.96
CDX95307	Canola	nucleus	46.19	43.43
Bra033472.1-P	Field mustard	nucleus	45.34	42.63
CDY23170	Canola	nucleus	45.76	42.19
Solyc03g006510.2.1	Tomato	plastid	46.19	35.74
Solyc02g078540.2.1	Tomato	nucleus	49.58	35.56
Solyc07g054180.2.1	Tomato	nucleus	45.34	25.72

Protein Annotations

MapMan:22.1.1.2	InterPro:Clathrin_L-chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020
GO:GO:0016192	GO:GO:0030125	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
GO:GO:0032050	GO:GO:0072583	UniProt:K4CRS2	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF19
EnsemblPlantsGene:Solyc09g014450.2	EnsemblPlants:Solyc09g014450.2.1	UniParc:UPI000276B911	SEG:seg	:	:

Description

Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:K4CRS2]

Coordinates

chr9:+:6067468..6071263

Molecular Weight (calculated)

26706.8 Da

IEP (calculated)

8.910

GRAVY (calculated)

-0.903

Length

236 amino acids

Sequence
(BLAST)

001: MSSHISGTSA AMTPPLDRSG DFEVATEESG DYVIGLESGT SEAQFIGENG PILPPPERMV AEEGFALREW RRLNAIRLEE KEKREKEIVR EIIEEAEEYK
101: AEYYRKWKLR CENNVAANRE KEKLFLANQE KFHTEANKAY WRAIGELIPK EVPTIEKKGK KDKEKQPFIN VIQGPKPGRP TELSRMRQIL VKLKHNPPEH
201: MKPSAKPSLE PRKDAKTGTE TSVTASAKPQ ATTAAP

Best Arabidopsis Sequence Match ( AT2G40060.1 )
(BLAST)

001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA

Arabidopsis Description

CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.