Factsheet for Solyc03g006510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033344	Potato	nucleus	79.67	78.39
GSMUA_Achr1P17650_001	Banana	nucleus	35.08	60.45
GSMUA_Achr9P23720_001	Banana	nucleus	36.07	59.14
Solyc02g078540.2.1	Tomato	nucleus	63.28	58.66
GSMUA_Achr2P18530_001	Banana	cytosol	16.72	52.04
TraesCSU01G218200.1	Wheat	nucleus	34.43	50.48
KRH10839	Soybean	nucleus	51.8	49.07
Os06t0731800-01	Rice	nucleus, plasma membrane	46.56	48.8
KRH21478	Soybean	nucleus	49.84	48.56
KRH20480	Soybean	endoplasmic reticulum	48.2	48.51
Zm00001d014898_P001	Maize	plasma membrane	44.59	47.89
EER89016	Sorghum	nucleus	44.59	47.72
KRH50011	Soybean	nucleus	47.87	47.1
Solyc09g014450.2.1	Tomato	plastid	35.74	46.19
Zm00001d001814_P001	Maize	nucleus	44.92	45.82
EES11661	Sorghum	nucleus	44.92	45.51
VIT_00s0370g00020.t01	Wine grape	nucleus	55.74	45.33
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	44.59	45.18
GSMUA_Achr11P...	Banana	nucleus	47.54	45.17
GSMUA_Achr3P14280_001	Banana	nucleus	42.3	45.1
Zm00001d026630_P001	Maize	plasma membrane	44.59	44.59
GSMUA_Achr5P20770_001	Banana	cytosol	46.23	44.2
TraesCSU01G101000.3	Wheat	nucleus	44.92	44.19
TraesCS2B01G594200.1	Wheat	nucleus	42.62	41.94
TraesCS2A01G590000.2	Wheat	nucleus	42.62	41.8
GSMUA_Achr4P26100_001	Banana	nucleus	46.56	40.69
TraesCS2D01G564200.1	Wheat	nucleus	41.31	40.65
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	43.28	38.15
GSMUA_AchrUn_...	Banana	nucleus	45.57	37.67
HORVU7Hr1G119590.1	Barley	nucleus, plastid	43.61	36.74
GSMUA_Achr8P11240_001	Banana	nucleus	43.93	34.01
Solyc07g054180.2.1	Tomato	nucleus	45.9	33.65

Protein Annotations

MapMan:22.1.1.2	InterPro:Clathrin_L-chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020
GO:GO:0016192	GO:GO:0030125	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
GO:GO:0032050	GO:GO:0072583	UniProt:K4BE74	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF8
EnsemblPlantsGene:Solyc03g006510.2	EnsemblPlants:Solyc03g006510.2.1	UniParc:UPI00027679BA	SEG:seg	:	:

Description

Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:K4BE74]

Coordinates

chr3:-:1090410..1093485

Molecular Weight (calculated)

33531.8 Da

IEP (calculated)

5.081

GRAVY (calculated)

-0.950

Length

305 amino acids

Sequence
(BLAST)

001: MASFDSFSMD GDDSVAMAAS PSFHDGDYSA AGTPVYEEVT VDHVSHTVNN PDPYGFGSGQ SIPFGDSEAP IADGNGKAYD LGEDSEGIFS SDGPVLPPPS
101: EMREEGLALR EWRRQNAVRL EENEKREKEI RNQIIEEGEE HKKAFYEKRK LNIETNKTNN RDKENVYVTN QEKFHKEADK QYWKAIAELI PNEVPNIEKK
201: GRKKDQEKKP SVTVLQGPKP GKPTDLSRMR HILVKLKHNP PPHMLPPPPA PAKDDKAGKD GKDAKNTKDA APATGDSVPA SESTVAQAIS QTLEPAATAE
301: VSLFS

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.