Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G564200.1 | Wheat | nucleus | 82.95 | 92.58 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 78.32 | 87.42 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 78.03 | 86.82 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 61.56 | 70.76 |
| Zm00001d001814_P001 | Maize | nucleus | 59.54 | 68.9 |
| EES11661 | Sorghum | nucleus | 58.67 | 67.44 |
| Zm00001d026630_P001 | Maize | plasma membrane | 56.36 | 63.93 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 32.08 | 62.71 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 33.24 | 61.83 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 39.6 | 47.9 |
| KRH21478 | Soybean | nucleus | 43.06 | 47.6 |
| KRH10839 | Soybean | nucleus | 43.35 | 46.58 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 42.2 | 45.77 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 12.72 | 44.9 |
| GSMUA_Achr11P... | Banana | nucleus | 41.62 | 44.86 |
| KRH50011 | Soybean | nucleus | 39.88 | 44.52 |
| KRH20480 | Soybean | endoplasmic reticulum | 38.73 | 44.22 |
| CDX81980 | Canola | nucleus | 40.75 | 44.2 |
| Solyc03g006510.2.1 | Tomato | plastid | 38.15 | 43.28 |
| Bra031138.1-P | Field mustard | nucleus | 39.02 | 42.72 |
| CDY13859 | Canola | nucleus | 39.02 | 42.72 |
| PGSC0003DMT400057639 | Potato | nucleus | 40.17 | 42.12 |
| Solyc02g078540.2.1 | Tomato | nucleus | 39.88 | 41.95 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 41.91 | 41.55 |
| PGSC0003DMT400033344 | Potato | nucleus | 36.99 | 41.29 |
| CDY31939 | Canola | nucleus | 22.83 | 39.9 |
| Bra036500.1-P | Field mustard | nucleus | 23.99 | 39.52 |
| KRH22403 | Soybean | nucleus | 36.99 | 39.02 |
| KRH26934 | Soybean | nucleus | 36.42 | 39.01 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 40.75 | 38.95 |
| AT2G20760.1 | Thale cress | nucleus | 37.86 | 38.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.04 | 38.48 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 40.75 | 37.6 |
| HORVU2Hr1G012100.2 | Barley | nucleus | 38.15 | 36.46 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 41.33 | 36.29 |
| CDY05790 | Canola | nucleus | 16.47 | 33.93 |
| Solyc07g054180.2.1 | Tomato | nucleus | 36.42 | 30.29 |
| PGSC0003DMT400047261 | Potato | extracellular | 36.99 | 29.36 |
Protein Annotations
| MapMan:22.1.1.2 | UniProt:A0A287JMQ9 | InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 |
| GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | EnsemblPlantsGene:HORVU2Hr1G118930 | EnsemblPlants:HORVU2Hr1G118930.1 |
| PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF12 | UniParc:UPI000B46B5E7 | SEG:seg | : |
Description
Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A287JMQ9]
Coordinates
chrchr2H:+:743648473..743651518
Molecular Weight (calculated)
37371.1 Da
IEP (calculated)
4.550
GRAVY (calculated)
-0.882
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: DAREVTAPVQ PHPRRAAQNP PTLPPPPPQP TMDPFFADDD GSALDDLQRT ASHPFDDTED DTTDAVAADG SAGGYASFAD AGYPSFADAG PEDEEEVVDE
101: EIAADSDGGA VPVRHVSGGY APSPFFPDSD FGGGDDDGPV LPPPAEMGRE EGALLREWRR QNALVLEEKE RKEKELRAQI IAEAEEFKIA FYEKRIQTCE
201: TNKVHSRERE KIFVESQEKF HASADKQYWK SISELIPHEI ATIEKRGKKD KDKKPSIAVI QGPKPGKPTD LSRMRQVLVK LKHAPPPHMM QPPPAPAAKE
301: GTKEGAKDGA PAPANGAKQP AESKEVPANG PATETEKEQP AAAAAE
101: EIAADSDGGA VPVRHVSGGY APSPFFPDSD FGGGDDDGPV LPPPAEMGRE EGALLREWRR QNALVLEEKE RKEKELRAQI IAEAEEFKIA FYEKRIQTCE
201: TNKVHSRERE KIFVESQEKF HASADKQYWK SISELIPHEI ATIEKRGKKD KDKKPSIAVI QGPKPGKPTD LSRMRQVLVK LKHAPPPHMM QPPPAPAAKE
301: GTKEGAKDGA PAPANGAKQP AESKEVPANG PATETEKEQP AAAAAE
001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
Arabidopsis Description
CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.