Factsheet for Os04t0679100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 26072143
plasma membrane: 27800704
plastid: 27992503

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11661	Sorghum	nucleus	75.75	75.75
Zm00001d001814_P001	Maize	nucleus	73.42	73.91
Zm00001d026630_P001	Maize	plasma membrane	71.1	70.16
TraesCS2B01G594200.1	Wheat	nucleus	71.43	69.35
TraesCS2D01G564200.1	Wheat	nucleus	69.44	67.42
TraesCS2A01G590000.2	Wheat	nucleus	69.44	67.2
GSMUA_Achr1P17650_001	Banana	nucleus	38.21	64.97
GSMUA_Achr9P23720_001	Banana	nucleus	39.2	63.44
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	70.76	61.56
Os06t0731800-01	Rice	nucleus, plasma membrane	49.5	51.2
GSMUA_Achr3P14280_001	Banana	nucleus	47.18	49.65
KRH21478	Soybean	nucleus	51.16	49.2
GSMUA_Achr5P20770_001	Banana	cytosol	51.16	48.28
GSMUA_Achr2P18530_001	Banana	cytosol	15.61	47.96
KRH10839	Soybean	nucleus	50.5	47.2
KRH50011	Soybean	nucleus	47.84	46.45
KRH20480	Soybean	endoplasmic reticulum	46.51	46.2
GSMUA_Achr11P...	Banana	nucleus	48.51	45.48
Solyc03g006510.2.1	Tomato	plastid	45.18	44.59
PGSC0003DMT400033344	Potato	nucleus	45.18	43.87
PGSC0003DMT400057639	Potato	nucleus	47.84	43.64
GSMUA_Achr4P26100_001	Banana	nucleus	50.17	43.27
CDX81980	Canola	nucleus	45.51	42.95
Solyc02g078540.2.1	Tomato	nucleus	46.84	42.86
Bra031138.1-P	Field mustard	nucleus	44.19	42.09
CDY13859	Canola	nucleus	44.19	42.09
KRH22403	Soybean	nucleus	45.85	42.07
KRH26934	Soybean	nucleus	44.19	41.18
AT2G20760.1	Thale cress	nucleus	45.85	40.83
CDY31939	Canola	nucleus	26.58	40.4
VIT_00s0370g00020.t01	Wine grape	nucleus	48.51	38.93
Bra036500.1-P	Field mustard	nucleus	26.91	38.57
GSMUA_AchrUn_...	Banana	nucleus	47.18	38.48
GSMUA_Achr8P11240_001	Banana	nucleus	48.51	37.06
Os07t0461500-00	Rice	cytosol	43.19	35.81
CDY05790	Canola	nucleus	19.93	35.71
Solyc07g054180.2.1	Tomato	nucleus	44.52	32.21
PGSC0003DMT400047261	Potato	extracellular	44.85	30.96

Protein Annotations

MapMan:22.1.1.2	EntrezGene:4337419	EMBL:AK103034	ProteinID:BAF16192.1	ProteinID:BAS91652.1	ProteinID:CAE05725.1
InterPro:Clathrin_L-chain	ncoils:Coil	ProteinID:EAZ32428.1	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020
GO:GO:0016192	GO:GO:0030125	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
GO:GO:0032050	GO:GO:0072583	EnsemblPlantsGene:Os04g0679100	EnsemblPlants:Os04t0679100-01	PFAM:PF01086	PANTHER:PTHR10639
PANTHER:PTHR10639:SF12	UniProt:Q7XKE9	UniParc:UPI00001B1528	RefSeq:XP_015636176.1	SEG:seg	:

Description

Clathrin light chain family protein. (Os04t0679100-01)

Coordinates

chr4:+:34677521..34681308

Molecular Weight (calculated)

32537.7 Da

IEP (calculated)

4.671

GRAVY (calculated)

-0.888

Length

301 amino acids

Sequence
(BLAST)

001: MASFFADDGA DELPRTASHP FDADDDAAPD ASGGAAADDT GYGGYASFVD GGVEDVEEEE EEIAVESEGV PIGHVSGGFS PSPFSPDPEL DGGDGPILPP
101: PAQMGAEEGI LLREWRRQNA IVLEEKERKE KELRAQILAE AEEFKKAFYE KRIQNCETNK VHNREREKIF VAGQEKFHAE ADKQYWKSIS ELIPHEIATI
201: EKRGKKDKDK KPSITVIQGP KPGKPTDLSR MRQILVKLKH APPPHMMQPP PASAAKDGAK DGAKDGTPAP ANGTKKPAES KEKPANGSPA EAEKEQPAAS
301: E

Best Arabidopsis Sequence Match ( AT2G40060.1 )
(BLAST)

001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA

Arabidopsis Description

CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.