Factsheet for GSMUA_AchrUn_randomP06320_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P26100_001	Banana	nucleus	65.31	69.05
GSMUA_Achr9P23720_001	Banana	nucleus	34.69	68.82
GSMUA_Achr1P17650_001	Banana	nucleus	32.52	67.8
GSMUA_Achr5P20770_001	Banana	cytosol	56.64	65.52
GSMUA_Achr11P...	Banana	nucleus	54.47	62.62
GSMUA_Achr2P18530_001	Banana	cytosol	15.99	60.2
GSMUA_Achr3P14280_001	Banana	nucleus	45.8	59.09
TraesCSU01G218200.1	Wheat	nucleus	32.52	57.69
Os06t0731800-01	Rice	nucleus, plasma membrane	43.9	55.67
GSMUA_Achr8P11240_001	Banana	nucleus	57.45	53.81
Zm00001d014898_P001	Maize	plasma membrane	40.11	52.11
EER89016	Sorghum	nucleus	39.84	51.58
KRH50011	Soybean	nucleus	41.73	49.68
KRH10839	Soybean	nucleus	42.82	49.07
KRH21478	Soybean	nucleus	41.46	48.88
TraesCSU01G101000.3	Wheat	nucleus	40.38	48.06
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	38.48	47.18
EES11661	Sorghum	nucleus	38.48	47.18
Zm00001d001814_P001	Maize	nucleus	37.94	46.82
TraesCS2B01G594200.1	Wheat	nucleus	39.02	46.45
KRH20480	Soybean	endoplasmic reticulum	37.94	46.2
TraesCS2A01G590000.2	Wheat	nucleus	38.75	45.98
PGSC0003DMT400033344	Potato	nucleus	38.48	45.81
TraesCS2D01G564200.1	Wheat	nucleus	38.48	45.81
CDX81980	Canola	nucleus	39.57	45.77
Solyc03g006510.2.1	Tomato	plastid	37.67	45.57
Bra031138.1-P	Field mustard	nucleus	39.02	45.57
CDY13859	Canola	nucleus	39.02	45.57
Solyc02g078540.2.1	Tomato	nucleus	40.11	44.98
VIT_00s0370g00020.t01	Wine grape	nucleus	44.99	44.27
Zm00001d026630_P001	Maize	plasma membrane	36.59	44.26
PGSC0003DMT400057639	Potato	nucleus	38.75	43.33
KRH26934	Soybean	nucleus	37.67	43.03
AT2G20760.1	Thale cress	nucleus	39.3	42.9
KRH22403	Soybean	nucleus	37.13	41.77
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	38.48	41.04
HORVU7Hr1G119590.1	Barley	nucleus, plastid	39.3	40.06
CDY31939	Canola	nucleus	21.14	39.39
Bra036500.1-P	Field mustard	nucleus	21.14	37.14
Solyc07g054180.2.1	Tomato	nucleus	39.57	35.1
CDY05790	Canola	nucleus	15.45	33.93
PGSC0003DMT400047261	Potato	extracellular	39.02	33.03

Protein Annotations

MapMan:22.1.1.2	InterPro:Clathrin_L-chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030130
GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	EnsemblPlantsGene:GSMUA_AchrUn_randomG06320_001	EnsemblPlants:GSMUA_AchrUn_randomP06320_001	EnsemblPlants:GSMUA_AchrUn_randomT06320_001
UniProt:M0U6U3	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF8	UniParc:UPI000294F1B8	SEG:seg

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG06320_001]

Coordinates

chrchrUn_random:-:26041575..26044694

Molecular Weight (calculated)

40114.5 Da

IEP (calculated)

4.943

GRAVY (calculated)

-0.993

Length

369 amino acids

Sequence
(BLAST)

001: MSSEFDTEFS NGGVQEEAAV APASATARPF DDGSLGYDPR LPSQRYDAYS SFAADEHAKD PASDDMFPGA ASADGGGGYG FQPEDVPIHH DGGGSMSASP
101: EGYGFSSSPS PFVMPEADEV ANGGEENGEI FITDGPLLPE PDQMREEGFL LREWRRQNAI ELEEKERKEK ERRNEIIAEA EEYKRAFYEK RKLNCETNKT
201: QNREREKLYL ANQEKFHANV DKQYWKAIAE LIPHEIANIE KRRGKKEQEK KPSIAVIQGP KPGKPTDISR MRQILVKLKH TPPPHMKPPP PPAPEPAKGA
301: KVGATATGKQ PVSPAKLAKD GGGGTAAVEK QLATPAEDPK ANGTTGSPKG ENPKVEEQAD KAPEPSSDA

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.