Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014898_P001 | Maize | plasma membrane | 76.98 | 78.87 |
| EER89016 | Sorghum | nucleus | 75.6 | 77.19 |
| TraesCSU01G218200.1 | Wheat | nucleus | 52.58 | 73.56 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 43.64 | 68.28 |
| TraesCSU01G101000.3 | Wheat | nucleus | 72.16 | 67.74 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 40.21 | 66.1 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 18.21 | 54.08 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 66.67 | 53.59 |
| GSMUA_Achr11P... | Banana | nucleus | 57.73 | 52.34 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 55.67 | 50.78 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 49.14 | 50.0 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 51.2 | 49.5 |
| KRH20480 | Soybean | endoplasmic reticulum | 50.86 | 48.84 |
| KRH50011 | Soybean | nucleus | 50.86 | 47.74 |
| KRH21478 | Soybean | nucleus | 50.86 | 47.28 |
| Solyc03g006510.2.1 | Tomato | plastid | 48.8 | 46.56 |
| KRH10839 | Soybean | nucleus | 51.2 | 46.27 |
| PGSC0003DMT400033344 | Potato | nucleus | 48.45 | 45.48 |
| CDX81980 | Canola | nucleus | 49.48 | 45.14 |
| Solyc02g078540.2.1 | Tomato | nucleus | 50.52 | 44.68 |
| PGSC0003DMT400057639 | Potato | nucleus | 50.52 | 44.55 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 52.92 | 44.13 |
| Bra031138.1-P | Field mustard | nucleus | 47.77 | 43.99 |
| CDY13859 | Canola | nucleus | 47.77 | 43.99 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.67 | 43.9 |
| KRH26934 | Soybean | nucleus | 46.39 | 41.8 |
| KRH22403 | Soybean | nucleus | 46.39 | 41.16 |
| CDY31939 | Canola | nucleus | 27.49 | 40.4 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 51.89 | 40.27 |
| AT2G20760.1 | Thale cress | nucleus | 46.74 | 40.24 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 52.58 | 38.83 |
| Os07t0461500-00 | Rice | cytosol | 46.05 | 36.91 |
| Bra036500.1-P | Field mustard | nucleus | 26.46 | 36.67 |
| CDY05790 | Canola | nucleus | 20.96 | 36.31 |
| Solyc07g054180.2.1 | Tomato | nucleus | 48.8 | 34.13 |
| PGSC0003DMT400047261 | Potato | extracellular | 47.77 | 31.88 |
Protein Annotations
| MapMan:22.1.1.2 | EntrezGene:4342159 | EMBL:AK069288 | ProteinID:BAD62498.1 | ProteinID:BAF20580.1 | ProteinID:BAS99661.1 |
| InterPro:Clathrin_L-chain | ncoils:Coil | ProteinID:EEE66409.1 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016192 | GO:GO:0030125 | GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 |
| GO:GO:0032050 | GO:GO:0072583 | EnsemblPlantsGene:Os06g0731800 | EnsemblPlants:Os06t0731800-01 | PFAM:PF01086 | PANTHER:PTHR10639 |
| PANTHER:PTHR10639:SF20 | UniProt:Q5Z402 | UniParc:UPI0000450861 | RefSeq:XP_015644113.1 | SEG:seg | : |
Description
Clathrin light chain family protein. (Os06t0731800-01)
Coordinates
chr6:-:31208435..31211392
Molecular Weight (calculated)
31292.0 Da
IEP (calculated)
7.869
GRAVY (calculated)
-0.736
Length
291 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAFDSPTA SPAASPFDDD SFLRFDAAAP APAPADAFPP SPEPYAFRPD APSPFGMPEA NGSLHDDPFA APDNDNGPVL PPPNQMGADE GFLLREWRRQ
101: NAILLEEKEK KEKEMRNQII LDAKEFKKAF VEKRKLNVET SKDQNREREK LYLANQEKFH AGADKQYWKA ISELIPHEIA NIEKRGAKKD KDKEKKPGIV
201: VIQGPKPGKP TDMSRMRQIL LKLKHTPPPH MKPPPPPAAA TGKDGAAGKD GAKVAAAASK DASANGSVPE MEKAAAAAAP AAAATEPIAA A
101: NAILLEEKEK KEKEMRNQII LDAKEFKKAF VEKRKLNVET SKDQNREREK LYLANQEKFH AGADKQYWKA ISELIPHEIA NIEKRGAKKD KDKEKKPGIV
201: VIQGPKPGKP TDMSRMRQIL LKLKHTPPPH MKPPPPPAAA TGKDGAAGKD GAKVAAAASK DASANGSVPE MEKAAAAAAP AAAATEPIAA A
001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
Arabidopsis Description
CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.