Factsheet for GSMUA_Achr8P11240_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P17650_001	Banana	nucleus	30.96	68.93
GSMUA_Achr9P23720_001	Banana	nucleus	32.49	68.82
GSMUA_Achr11P...	Banana	nucleus	55.84	68.54
GSMUA_Achr5P20770_001	Banana	cytosol	55.33	68.34
GSMUA_Achr2P18530_001	Banana	cytosol	15.48	62.24
GSMUA_Achr4P26100_001	Banana	nucleus	53.3	60.17
GSMUA_Achr3P14280_001	Banana	nucleus	42.39	58.39
GSMUA_AchrUn_...	Banana	nucleus	53.81	57.45
TraesCSU01G218200.1	Wheat	nucleus	27.92	52.88
Os06t0731800-01	Rice	nucleus, plasma membrane	38.83	52.58
KRH21478	Soybean	nucleus	39.85	50.16
EER89016	Sorghum	nucleus	36.04	49.82
Zm00001d014898_P001	Maize	plasma membrane	35.28	48.94
KRH10839	Soybean	nucleus	39.85	48.76
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	37.06	48.51
KRH50011	Soybean	nucleus	38.07	48.39
KRH20480	Soybean	endoplasmic reticulum	36.55	47.52
TraesCS2B01G594200.1	Wheat	nucleus	37.06	47.1
TraesCSU01G101000.3	Wheat	nucleus	36.55	46.45
TraesCS2D01G564200.1	Wheat	nucleus	36.29	46.13
TraesCS2A01G590000.2	Wheat	nucleus	36.04	45.66
EES11661	Sorghum	nucleus	34.52	45.18
Bra031138.1-P	Field mustard	nucleus	36.04	44.94
CDY13859	Canola	nucleus	36.04	44.94
CDX81980	Canola	nucleus	36.29	44.83
Zm00001d001814_P001	Maize	nucleus	34.01	44.82
PGSC0003DMT400033344	Potato	nucleus	35.03	44.52
Solyc03g006510.2.1	Tomato	plastid	34.01	43.93
PGSC0003DMT400057639	Potato	nucleus	36.55	43.64
Solyc02g078540.2.1	Tomato	nucleus	36.29	43.47
Zm00001d026630_P001	Maize	plasma membrane	32.99	42.62
KRH26934	Soybean	nucleus	34.01	41.49
VIT_00s0370g00020.t01	Wine grape	nucleus	39.34	41.33
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	36.29	41.33
CDY31939	Canola	nucleus	20.56	40.91
KRH22403	Soybean	nucleus	33.76	40.55
HORVU7Hr1G119590.1	Barley	nucleus, plastid	36.04	39.23
AT2G20760.1	Thale cress	nucleus	33.25	38.76
Bra036500.1-P	Field mustard	nucleus	20.05	37.62
Solyc07g054180.2.1	Tomato	nucleus	35.79	33.89
CDY05790	Canola	nucleus	13.96	32.74
PGSC0003DMT400047261	Potato	extracellular	34.77	31.42

Protein Annotations

MapMan:22.1.1.2	InterPro:Clathrin_L-chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030130
GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	EnsemblPlantsGene:GSMUA_Achr8G11240_001	EnsemblPlants:GSMUA_Achr8P11240_001	EnsemblPlants:GSMUA_Achr8T11240_001
UniProt:M0TPH7	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF20	UniParc:UPI000296A0CD	SEG:seg

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G11240_001]

Coordinates

chr8:+:8127725..8131070

Molecular Weight (calculated)

43260.8 Da

IEP (calculated)

6.455

GRAVY (calculated)

-0.616

Length

394 amino acids

Sequence
(BLAST)

001: MSSAFEAFSN DGDAEVVMGG SAASCPFDDG YLGYDPRLPS QRFDAFSSFS PADDADPAMD HSPGFPVDVA SGSGGAVFGF HTDDVPVHHH HPAVGGGDSI
101: PASPEAYGFS SGATSFTVPL ANGTPAYGVE ENGEIFTSDG PILPDPDQMQ RDEGFVLREW RRQNAIFLEE KERKEKESRN ELIAEAEEYK QAFYEKRKLN
201: CETNKLQHRE REKLYLANQE KFHASADKEY WKAISELIPH EIAKIEKRGK KEQEKKPSMV VIQGPKPGKP TDLSRMRQIL IKLKHTPPPH MKPPTPPASA
301: PAKDAEDSSA AAGKKLASSA DDAKAKGATA SPKIDISATG QVIKAPELNH INLSLASLCV WNAIFSHSPW VRNIRVIMQY LQFNLMSKMK NNLK

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.