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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • mitochondrion 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 23508561 doi
Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck
Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER89016 Sorghum nucleus 92.96 92.63
Os06t0731800-01 Rice nucleus, plasma membrane 78.87 76.98
TraesCSU01G218200.1 Wheat nucleus 51.41 70.19
GSMUA_Achr9P23720_001 Banana nucleus 44.37 67.74
GSMUA_Achr1P17650_001 Banana nucleus 39.79 63.84
TraesCSU01G101000.3 Wheat nucleus 68.66 62.9
HORVU7Hr1G119590.1 Barley nucleus, plastid 66.2 51.93
GSMUA_Achr11P... Banana nucleus 55.63 49.22
GSMUA_Achr2P18530_001 Banana cytosol 16.9 48.98
GSMUA_Achr3P14280_001 Banana nucleus 48.59 48.25
KRH50011 Soybean nucleus 51.06 46.77
GSMUA_Achr5P20770_001 Banana cytosol 52.11 46.4
KRH20480 Soybean endoplasmic reticulum 49.3 46.2
Zm00001d001814_P001 Maize nucleus 48.24 45.82
KRH10839 Soybean nucleus 51.76 45.65
Zm00001d026630_P001 Maize plasma membrane 48.94 45.57
KRH21478 Soybean nucleus 50.0 45.37
Solyc03g006510.2.1 Tomato plastid 47.89 44.59
CDX81980 Canola nucleus 48.94 43.57
Bra031138.1-P Field mustard nucleus 47.89 43.04
CDY13859 Canola nucleus 47.89 43.04
Solyc02g078540.2.1 Tomato nucleus 49.3 42.55
PGSC0003DMT400033344 Potato nucleus 46.13 42.26
GSMUA_Achr4P26100_001 Banana nucleus 51.76 42.12
PGSC0003DMT400057639 Potato nucleus 48.59 41.82
GSMUA_AchrUn_... Banana nucleus 52.11 40.11
AT2G20760.1 Thale cress nucleus 47.54 39.94
CDY31939 Canola nucleus 27.82 39.9
KRH22403 Soybean nucleus 44.72 38.72
KRH26934 Soybean nucleus 43.66 38.39
VIT_00s0370g00020.t01 Wine grape nucleus 50.0 37.87
Zm00001d019596_P001 Maize nucleus 45.07 36.68
Bra036500.1-P Field mustard nucleus 26.76 36.19
CDY05790 Canola nucleus 21.13 35.71
GSMUA_Achr8P11240_001 Banana nucleus 48.94 35.28
Solyc07g054180.2.1 Tomato nucleus 47.18 32.21
PGSC0003DMT400047261 Potato extracellular 47.54 30.96
Protein Annotations
EntrezGene:100277113MapMan:22.1.1.2ProteinID:AQK67461.1UniProt:B4FIZ5EMBL:BT037083InterPro:Clathrin_L-chain
EMBL:EU966839GO:GO:0003674GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005794GO:GO:0005886GO:GO:0005905GO:GO:0006810GO:GO:0006886
GO:GO:0008150GO:GO:0016020GO:GO:0016192GO:GO:0030130GO:GO:0030132GO:GO:0030659
GO:GO:0031410PFAM:PF01086PANTHER:PTHR10639PANTHER:PTHR10639:SF20UniParc:UPI00017B71E2EnsemblPlantsGene:Zm00001d014898
EnsemblPlants:Zm00001d014898_P001EnsemblPlants:Zm00001d014898_T001SEG:seg:::
Description
Clathrin light chain 2
Coordinates
chr5:+:67324193..67326833
Molecular Weight (calculated)
30324.9 Da
IEP (calculated)
7.037
GRAVY (calculated)
-0.669
Length
284 amino acids
Sequence
(BLAST)
001: MATAFDSPTS SPAAAPFHDD PFLHFDGSAP AAADGFPASP DAYAPSPFGM PHSNGDLHDD PFAAPADSNG GPILPPPTEM GREEGFLLRE WCRQNAIHLE
101: EKEKKEKELR SQIIVDAEEF KKAFVEKRKL NAETSKGQNR DREKLFLANQ EKFHAGADKQ YWKAISELIP HEIANIEKRG ARKDKEKKPG IVVIQGPKPG
201: KPTDMARMRQ ILLKLKHTPP PHMKPPPPPA AATGKDGAPA AAGKDGAKPA TVANGSVPEM EKAAAEASVP AAAPPAATEP IAAA
Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.