Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
23508561
mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EER89016 | Sorghum | nucleus | 92.96 | 92.63 |
Os06t0731800-01 | Rice | nucleus, plasma membrane | 78.87 | 76.98 |
TraesCSU01G218200.1 | Wheat | nucleus | 51.41 | 70.19 |
GSMUA_Achr9P23720_001 | Banana | nucleus | 44.37 | 67.74 |
GSMUA_Achr1P17650_001 | Banana | nucleus | 39.79 | 63.84 |
TraesCSU01G101000.3 | Wheat | nucleus | 68.66 | 62.9 |
HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 66.2 | 51.93 |
GSMUA_Achr11P... | Banana | nucleus | 55.63 | 49.22 |
GSMUA_Achr2P18530_001 | Banana | cytosol | 16.9 | 48.98 |
GSMUA_Achr3P14280_001 | Banana | nucleus | 48.59 | 48.25 |
KRH50011 | Soybean | nucleus | 51.06 | 46.77 |
GSMUA_Achr5P20770_001 | Banana | cytosol | 52.11 | 46.4 |
KRH20480 | Soybean | endoplasmic reticulum | 49.3 | 46.2 |
Zm00001d001814_P001 | Maize | nucleus | 48.24 | 45.82 |
KRH10839 | Soybean | nucleus | 51.76 | 45.65 |
Zm00001d026630_P001 | Maize | plasma membrane | 48.94 | 45.57 |
KRH21478 | Soybean | nucleus | 50.0 | 45.37 |
Solyc03g006510.2.1 | Tomato | plastid | 47.89 | 44.59 |
CDX81980 | Canola | nucleus | 48.94 | 43.57 |
Bra031138.1-P | Field mustard | nucleus | 47.89 | 43.04 |
CDY13859 | Canola | nucleus | 47.89 | 43.04 |
Solyc02g078540.2.1 | Tomato | nucleus | 49.3 | 42.55 |
PGSC0003DMT400033344 | Potato | nucleus | 46.13 | 42.26 |
GSMUA_Achr4P26100_001 | Banana | nucleus | 51.76 | 42.12 |
PGSC0003DMT400057639 | Potato | nucleus | 48.59 | 41.82 |
GSMUA_AchrUn_... | Banana | nucleus | 52.11 | 40.11 |
AT2G20760.1 | Thale cress | nucleus | 47.54 | 39.94 |
CDY31939 | Canola | nucleus | 27.82 | 39.9 |
KRH22403 | Soybean | nucleus | 44.72 | 38.72 |
KRH26934 | Soybean | nucleus | 43.66 | 38.39 |
VIT_00s0370g00020.t01 | Wine grape | nucleus | 50.0 | 37.87 |
Zm00001d019596_P001 | Maize | nucleus | 45.07 | 36.68 |
Bra036500.1-P | Field mustard | nucleus | 26.76 | 36.19 |
CDY05790 | Canola | nucleus | 21.13 | 35.71 |
GSMUA_Achr8P11240_001 | Banana | nucleus | 48.94 | 35.28 |
Solyc07g054180.2.1 | Tomato | nucleus | 47.18 | 32.21 |
PGSC0003DMT400047261 | Potato | extracellular | 47.54 | 30.96 |
Protein Annotations
EntrezGene:100277113 | MapMan:22.1.1.2 | ProteinID:AQK67461.1 | UniProt:B4FIZ5 | EMBL:BT037083 | InterPro:Clathrin_L-chain |
EMBL:EU966839 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 |
GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 |
GO:GO:0031410 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF20 | UniParc:UPI00017B71E2 | EnsemblPlantsGene:Zm00001d014898 |
EnsemblPlants:Zm00001d014898_P001 | EnsemblPlants:Zm00001d014898_T001 | SEG:seg | : | : | : |
Description
Clathrin light chain 2
Coordinates
chr5:+:67324193..67326833
Molecular Weight (calculated)
30324.9 Da
IEP (calculated)
7.037
GRAVY (calculated)
-0.669
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAFDSPTS SPAAAPFHDD PFLHFDGSAP AAADGFPASP DAYAPSPFGM PHSNGDLHDD PFAAPADSNG GPILPPPTEM GREEGFLLRE WCRQNAIHLE
101: EKEKKEKELR SQIIVDAEEF KKAFVEKRKL NAETSKGQNR DREKLFLANQ EKFHAGADKQ YWKAISELIP HEIANIEKRG ARKDKEKKPG IVVIQGPKPG
201: KPTDMARMRQ ILLKLKHTPP PHMKPPPPPA AATGKDGAPA AAGKDGAKPA TVANGSVPEM EKAAAEASVP AAAPPAATEP IAAA
101: EKEKKEKELR SQIIVDAEEF KKAFVEKRKL NAETSKGQNR DREKLFLANQ EKFHAGADKQ YWKAISELIP HEIANIEKRG ARKDKEKKPG IVVIQGPKPG
201: KPTDMARMRQ ILLKLKHTPP PHMKPPPPPA AATGKDGAPA AAGKDGAKPA TVANGSVPEM EKAAAEASVP AAAPPAATEP IAAA
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.