Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G218200.1 | Wheat | nucleus | 49.72 | 86.54 |
| TraesCSU01G101000.3 | Wheat | nucleus | 67.4 | 78.71 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 53.59 | 66.67 |
| Zm00001d014898_P001 | Maize | plasma membrane | 51.93 | 66.2 |
| EER89016 | Sorghum | nucleus | 50.55 | 64.21 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 32.32 | 62.9 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 30.66 | 62.71 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 14.09 | 52.04 |
| GSMUA_Achr11P... | Banana | nucleus | 42.54 | 47.98 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 41.99 | 47.65 |
| KRH10839 | Soybean | nucleus | 40.61 | 45.65 |
| KRH21478 | Soybean | nucleus | 38.95 | 45.05 |
| KRH20480 | Soybean | endoplasmic reticulum | 37.29 | 44.55 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 34.81 | 44.06 |
| KRH50011 | Soybean | nucleus | 37.57 | 43.87 |
| Solyc03g006510.2.1 | Tomato | plastid | 36.74 | 43.61 |
| Solyc02g078540.2.1 | Tomato | nucleus | 39.5 | 43.47 |
| PGSC0003DMT400057639 | Potato | nucleus | 38.95 | 42.73 |
| CDX81980 | Canola | nucleus | 37.57 | 42.63 |
| Bra031138.1-P | Field mustard | nucleus | 37.02 | 42.41 |
| CDY13859 | Canola | nucleus | 37.02 | 42.41 |
| PGSC0003DMT400033344 | Potato | nucleus | 36.19 | 42.26 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 39.78 | 41.26 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 38.95 | 40.75 |
| CDY31939 | Canola | nucleus | 21.55 | 39.39 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.06 | 39.3 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 40.33 | 38.93 |
| AT2G20760.1 | Thale cress | nucleus | 36.19 | 38.76 |
| KRH26934 | Soybean | nucleus | 33.98 | 38.08 |
| Bra036500.1-P | Field mustard | nucleus | 20.99 | 36.19 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 39.23 | 36.04 |
| HORVU2Hr1G012100.2 | Barley | nucleus | 35.91 | 35.91 |
| KRH22403 | Soybean | nucleus | 31.77 | 35.06 |
| Solyc07g054180.2.1 | Tomato | nucleus | 36.19 | 31.49 |
| CDY05790 | Canola | nucleus | 14.36 | 30.95 |
| PGSC0003DMT400047261 | Potato | extracellular | 35.91 | 29.82 |
Protein Annotations
| MapMan:22.1.1.2 | UniProt:A0A287XZK1 | InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 |
| GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | EnsemblPlantsGene:HORVU7Hr1G119590 | EnsemblPlants:HORVU7Hr1G119590.1 |
| PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF20 | UniParc:UPI000B46CA6C | SEG:seg | : |
Description
Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A287XZK1]
Coordinates
chrchr7H:+:649994417..649997936
Molecular Weight (calculated)
38416.1 Da
IEP (calculated)
6.848
GRAVY (calculated)
-0.641
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: PFAGKVGSGS PVIWGANDLP HLHIPPASPP PFHFPSQITT TSTLPRSSPH RPSMATAFDS PTSSPAAAPF HDDPFLSFAD GSSPAAADVH VSGAGDDFPA
101: SPDPYAFRHD SAAAHPFGMP DSNGNGMHHE DDDGLFTDSG PVLPDPAQMG ADDGILLREW RRQNALLLEE KEKHEKELRS QIILEAEEFK KGFVEKRKLN
201: LETSKDHNRE REKLFLSNQE KFHKGADKQY WKAISELIPQ EIAHIEKRTG KKDKDKKPGI IVVQGPKPGK ATDMARMRQI LSKLKHTPPP HMKPPPPPAV
301: AAAGKDGAPA AAGKDGAKAA ATPAAKDAPA NGTVPEMEKA APAAAAPEAA APAPPAEPIA AA
101: SPDPYAFRHD SAAAHPFGMP DSNGNGMHHE DDDGLFTDSG PVLPDPAQMG ADDGILLREW RRQNALLLEE KEKHEKELRS QIILEAEEFK KGFVEKRKLN
201: LETSKDHNRE REKLFLSNQE KFHKGADKQY WKAISELIPQ EIAHIEKRTG KKDKDKKPGI IVVQGPKPGK ATDMARMRQI LSKLKHTPPP HMKPPPPPAV
301: AAAGKDGAPA AAGKDGAKAA ATPAAKDAPA NGTVPEMEKA APAAAAPEAA APAPPAEPIA AA
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.