Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P23720_001 | Banana | nucleus | 70.06 | 66.67 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 27.68 | 50.0 |
| TraesCSU01G218200.1 | Wheat | nucleus | 58.19 | 49.52 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 72.32 | 44.76 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 66.1 | 40.21 |
| Zm00001d014898_P001 | Maize | plasma membrane | 63.84 | 39.79 |
| EER89016 | Sorghum | nucleus | 63.84 | 39.65 |
| GSMUA_Achr11P... | Banana | nucleus | 71.75 | 39.56 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 64.97 | 38.21 |
| KRH50011 | Soybean | nucleus | 66.1 | 37.74 |
| KRH21478 | Soybean | nucleus | 66.67 | 37.7 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 67.8 | 37.62 |
| KRH20480 | Soybean | endoplasmic reticulum | 63.84 | 37.29 |
| TraesCSU01G101000.3 | Wheat | nucleus | 63.84 | 36.45 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 63.28 | 36.13 |
| KRH10839 | Soybean | nucleus | 65.54 | 36.02 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 63.28 | 36.01 |
| EES11661 | Sorghum | nucleus | 61.02 | 35.88 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 62.71 | 35.81 |
| Zm00001d001814_P001 | Maize | nucleus | 59.32 | 35.12 |
| Solyc03g006510.2.1 | Tomato | plastid | 60.45 | 35.08 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 68.36 | 34.67 |
| PGSC0003DMT400033344 | Potato | nucleus | 60.45 | 34.52 |
| Zm00001d026630_P001 | Maize | plasma membrane | 59.32 | 34.43 |
| Bra031138.1-P | Field mustard | nucleus | 60.45 | 33.86 |
| CDY13859 | Canola | nucleus | 60.45 | 33.86 |
| CDX81980 | Canola | nucleus | 61.02 | 33.86 |
| PGSC0003DMT400057639 | Potato | nucleus | 62.71 | 33.64 |
| CDY31939 | Canola | nucleus | 37.29 | 33.33 |
| Solyc02g078540.2.1 | Tomato | nucleus | 60.45 | 32.52 |
| GSMUA_AchrUn_... | Banana | nucleus | 67.8 | 32.52 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 62.71 | 32.08 |
| Bra036500.1-P | Field mustard | nucleus | 37.85 | 31.9 |
| KRH26934 | Soybean | nucleus | 58.19 | 31.89 |
| KRH22403 | Soybean | nucleus | 58.19 | 31.4 |
| AT2G20760.1 | Thale cress | nucleus | 59.89 | 31.36 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 68.93 | 30.96 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 65.54 | 30.93 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 62.71 | 30.66 |
| CDY05790 | Canola | nucleus | 25.42 | 26.79 |
| Solyc07g054180.2.1 | Tomato | nucleus | 59.89 | 25.48 |
| PGSC0003DMT400047261 | Potato | extracellular | 59.89 | 24.31 |
Protein Annotations
| MapMan:22.1.1.2 | InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 |
| GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | EnsemblPlantsGene:GSMUA_Achr1G17650_001 | EnsemblPlants:GSMUA_Achr1P17650_001 | EnsemblPlants:GSMUA_Achr1T17650_001 |
| UniProt:M0S0S3 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF10 | UniParc:UPI000296A756 | SEG:seg |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G17650_001]
Coordinates
chr1:-:13129129..13131797
Molecular Weight (calculated)
20393.4 Da
IEP (calculated)
10.480
GRAVY (calculated)
-1.212
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MQLEEGFILR EWRRQNAILL EEKERKEKEH RNQITAEAEE YKLAFNEKRK LNRETNKIQN REREKLFVAD QEKFYGNADQ NYWKAISELI PREIPSIKKR
101: GKKEEKKPSI VVVQGPKPGK PTDLSRMRQI LAKLKHNTPT HLKPPPPPAP AKDGAAATGT KQEAATTETT TNSKPST
101: GKKEEKKPSI VVVQGPKPGK PTDLSRMRQI LAKLKHNTPT HLKPPPPPAP AKDGAAATGT KQEAATTETT TNSKPST
001: MSSTLSNEES GLGDSNRSTE VDGGDGGNFT AYESRFQSQR FDSSFSNFDS QPEKESDLPC GDSSPRPETQ SPPSINSFDD TNDSILPPPS AMEKEEGFAL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
Arabidopsis Description
Clathrin light chain 3 [Source:UniProtKB/Swiss-Prot;Acc:F4J5M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.