Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d001814_P001 | Maize | nucleus | 87.04 | 87.63 |
| Zm00001d026630_P001 | Maize | plasma membrane | 82.39 | 81.31 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 75.75 | 75.75 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 67.77 | 65.59 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 67.44 | 65.48 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 67.44 | 65.48 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 35.88 | 61.02 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 37.54 | 60.75 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 67.44 | 58.67 |
| EER89016 | Sorghum | nucleus | 48.17 | 50.88 |
| KRH21478 | Soybean | nucleus | 49.83 | 47.92 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 44.85 | 47.2 |
| KRH10839 | Soybean | nucleus | 49.83 | 46.58 |
| KRH50011 | Soybean | nucleus | 47.51 | 46.13 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 48.17 | 45.45 |
| KRH20480 | Soybean | endoplasmic reticulum | 45.51 | 45.21 |
| Solyc03g006510.2.1 | Tomato | plastid | 45.51 | 44.92 |
| PGSC0003DMT400033344 | Potato | nucleus | 44.19 | 42.9 |
| GSMUA_Achr11P... | Banana | nucleus | 45.51 | 42.68 |
| Solyc02g078540.2.1 | Tomato | nucleus | 46.18 | 42.25 |
| PGSC0003DMT400057639 | Potato | nucleus | 46.18 | 42.12 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 13.62 | 41.84 |
| CDX81980 | Canola | nucleus | 43.85 | 41.38 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 47.51 | 40.97 |
| AT2G20760.1 | Thale cress | nucleus | 45.51 | 40.53 |
| CDY13859 | Canola | nucleus | 42.52 | 40.51 |
| Bra031138.1-P | Field mustard | nucleus | 42.52 | 40.51 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 49.5 | 39.73 |
| KRH22403 | Soybean | nucleus | 42.86 | 39.33 |
| KRH26934 | Soybean | nucleus | 41.86 | 39.01 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.18 | 38.48 |
| OQU88983 | Sorghum | nucleus | 40.86 | 37.73 |
| CDY31939 | Canola | nucleus | 24.58 | 37.37 |
| Bra036500.1-P | Field mustard | nucleus | 24.58 | 35.24 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 45.18 | 34.52 |
| CDY05790 | Canola | nucleus | 18.27 | 32.74 |
| Solyc07g054180.2.1 | Tomato | nucleus | 44.52 | 32.21 |
| PGSC0003DMT400047261 | Potato | extracellular | 45.18 | 31.19 |
Protein Annotations
| MapMan:22.1.1.2 | EntrezGene:8076473 | UniProt:C5YAK6 | InterPro:Clathrin_L-chain | ncoils:Coil | EnsemblPlants:EES11661 |
| ProteinID:EES11661 | ProteinID:EES11661.1 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 |
| GO:GO:0030125 | GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032050 |
| GO:GO:0072583 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF12 | EnsemblPlantsGene:SORBI_3006G268900 | unigene:Sbi.15130 |
| UniParc:UPI0001A87016 | RefSeq:XP_002447333.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:60166815..60170694
Molecular Weight (calculated)
32527.8 Da
IEP (calculated)
5.012
GRAVY (calculated)
-0.889
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFFGDDGA DELPRTTSHP FDSDDFGAAA ADGDGAGGYG GYASFAEGGV EDVDEEITVE SDGVPIRHVS GGYSPSPFSP ELEPNGGDGP ILPPPTEMRE
101: EGILLREWRR KNAIELEKKE QKEKELRAQI IAEAEEFKKA FFEKRIQNCA SNMVNNRERE KIFVASQEKF HANADKQYWK SISDLIPHEI ATIEKRGKKD
201: KDKKPSITVI QGPKPGKPTD LSRMRHILVK LKHAPPPHML QPPPAPAAKE GAKDGAKEGA KDGAKEGAAA PANGAKQPAE SQETPANGPS EAEKEQPAAS
301: E
101: EGILLREWRR KNAIELEKKE QKEKELRAQI IAEAEEFKKA FFEKRIQNCA SNMVNNRERE KIFVASQEKF HANADKQYWK SISDLIPHEI ATIEKRGKKD
201: KDKKPSITVI QGPKPGKPTD LSRMRHILVK LKHAPPPHML QPPPAPAAKE GAKDGAKEGA KDGAKEGAAA PANGAKQPAE SQETPANGPS EAEKEQPAAS
301: E
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.