Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G590000.2 | Wheat | nucleus | 91.29 | 91.0 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 90.65 | 90.65 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 87.42 | 78.32 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 69.35 | 71.43 |
| Zm00001d001814_P001 | Maize | nucleus | 65.81 | 68.23 |
| EES11661 | Sorghum | nucleus | 65.48 | 67.44 |
| Zm00001d026630_P001 | Maize | plasma membrane | 62.9 | 63.93 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 35.81 | 62.71 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 36.77 | 61.29 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 45.81 | 49.65 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 48.39 | 47.02 |
| GSMUA_Achr11P... | Banana | nucleus | 47.1 | 45.48 |
| KRH21478 | Soybean | nucleus | 45.81 | 45.37 |
| KRH10839 | Soybean | nucleus | 47.1 | 45.34 |
| KRH20480 | Soybean | endoplasmic reticulum | 42.9 | 43.89 |
| CDX81980 | Canola | nucleus | 45.16 | 43.89 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 13.87 | 43.88 |
| KRH50011 | Soybean | nucleus | 43.87 | 43.87 |
| Solyc03g006510.2.1 | Tomato | plastid | 41.94 | 42.62 |
| PGSC0003DMT400057639 | Potato | nucleus | 45.16 | 42.42 |
| Bra031138.1-P | Field mustard | nucleus | 43.23 | 42.41 |
| CDY13859 | Canola | nucleus | 43.23 | 42.41 |
| PGSC0003DMT400033344 | Potato | nucleus | 42.26 | 42.26 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 47.1 | 41.83 |
| Solyc02g078540.2.1 | Tomato | nucleus | 44.19 | 41.64 |
| CDY31939 | Canola | nucleus | 25.48 | 39.9 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.45 | 39.02 |
| KRH26934 | Soybean | nucleus | 40.32 | 38.7 |
| KRH22403 | Soybean | nucleus | 40.65 | 38.41 |
| TraesCS2B01G073000.1 | Wheat | nucleus | 42.9 | 37.89 |
| Bra036500.1-P | Field mustard | nucleus | 25.48 | 37.62 |
| AT2G20760.1 | Thale cress | nucleus | 40.97 | 37.57 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 44.84 | 37.07 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 47.1 | 37.06 |
| CDY05790 | Canola | nucleus | 19.35 | 35.71 |
| Solyc07g054180.2.1 | Tomato | nucleus | 39.35 | 29.33 |
| PGSC0003DMT400047261 | Potato | extracellular | 39.35 | 27.98 |
Protein Annotations
| MapMan:22.1.1.2 | InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005829 | GO:GO:0005886 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 |
| GO:GO:0030132 | GO:GO:0072583 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF12 | EnsemblPlantsGene:TraesCS2B01G594200 |
| EnsemblPlants:TraesCS2B01G594200.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:778848990..778851310
Molecular Weight (calculated)
33259.3 Da
IEP (calculated)
4.529
GRAVY (calculated)
-0.853
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPFFAADDG GAADDLQRTA SHPFDDAEDA NGGAGGYASF ADAGYGSFAD AGPEEEEEEE AVDEEIAADS DGGAVPVRHV SGGYAPAAFF PDSDFGGGDD
101: DGGPVLPPPA EMGREEGVLL REWRRQNALV LEEKERKEKE LRAQIIAEAE EFKIAFNEKR IQTCETNKVH SREREKIFVE SQEKFHASAD KQYWKSISEL
201: IPHEIATIEK RGKKDKDKKP SIAVIQGPKP GKPTDLSRMR QVLVKLKHAP PPHMMQPPPA PAAKEGAKEG AKDGAPAPAN GAKQPAESKE APANGPAAET
301: EKEQPAAASE
101: DGGPVLPPPA EMGREEGVLL REWRRQNALV LEEKERKEKE LRAQIIAEAE EFKIAFNEKR IQTCETNKVH SREREKIFVE SQEKFHASAD KQYWKSISEL
201: IPHEIATIEK RGKKDKDKKP SIAVIQGPKP GKPTDLSRMR QVLVKLKHAP PPHMMQPPPA PAAKEGAKEG AKDGAPAPAN GAKQPAESKE APANGPAAET
301: EKEQPAAASE
001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
Arabidopsis Description
CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.