Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr1P17650_001 | Banana | nucleus | 66.67 | 70.06 |
GSMUA_Achr2P18530_001 | Banana | cytosol | 29.57 | 56.12 |
TraesCSU01G218200.1 | Wheat | nucleus | 58.6 | 52.4 |
GSMUA_Achr3P14280_001 | Banana | nucleus | 68.28 | 44.41 |
Zm00001d014898_P001 | Maize | plasma membrane | 67.74 | 44.37 |
EER89016 | Sorghum | nucleus | 67.2 | 43.86 |
Os06t0731800-01 | Rice | nucleus, plasma membrane | 68.28 | 43.64 |
GSMUA_Achr5P20770_001 | Banana | cytosol | 72.04 | 42.01 |
GSMUA_Achr11P... | Banana | nucleus | 71.51 | 41.43 |
KRH21478 | Soybean | nucleus | 68.28 | 40.58 |
KRH10839 | Soybean | nucleus | 68.82 | 39.75 |
KRH50011 | Soybean | nucleus | 65.59 | 39.35 |
KRH20480 | Soybean | endoplasmic reticulum | 63.98 | 39.27 |
Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 63.44 | 39.2 |
TraesCSU01G101000.3 | Wheat | nucleus | 65.05 | 39.03 |
Zm00001d001814_P001 | Maize | nucleus | 61.83 | 38.46 |
Bra031138.1-P | Field mustard | nucleus | 63.98 | 37.66 |
CDY13859 | Canola | nucleus | 63.98 | 37.66 |
CDX81980 | Canola | nucleus | 64.52 | 37.62 |
EES11661 | Sorghum | nucleus | 60.75 | 37.54 |
TraesCS2D01G564200.1 | Wheat | nucleus | 61.83 | 37.1 |
Zm00001d026630_P001 | Maize | plasma membrane | 60.75 | 37.05 |
GSMUA_Achr4P26100_001 | Banana | nucleus | 69.35 | 36.96 |
TraesCS2B01G594200.1 | Wheat | nucleus | 61.29 | 36.77 |
TraesCS2A01G590000.2 | Wheat | nucleus | 61.29 | 36.66 |
CDY31939 | Canola | nucleus | 38.71 | 36.36 |
PGSC0003DMT400033344 | Potato | nucleus | 60.22 | 36.13 |
Solyc03g006510.2.1 | Tomato | plastid | 59.14 | 36.07 |
Solyc02g078540.2.1 | Tomato | nucleus | 63.44 | 35.87 |
PGSC0003DMT400057639 | Potato | nucleus | 62.9 | 35.45 |
Bra036500.1-P | Field mustard | nucleus | 39.78 | 35.24 |
GSMUA_AchrUn_... | Banana | nucleus | 68.82 | 34.69 |
AT2G20760.1 | Thale cress | nucleus | 62.9 | 34.62 |
VIT_00s0370g00020.t01 | Wine grape | nucleus | 68.82 | 34.13 |
CDY05790 | Canola | nucleus | 30.65 | 33.93 |
KRH26934 | Soybean | nucleus | 58.06 | 33.44 |
HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 61.83 | 33.24 |
KRH22403 | Soybean | nucleus | 57.53 | 32.62 |
GSMUA_Achr8P11240_001 | Banana | nucleus | 68.82 | 32.49 |
HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 62.9 | 32.32 |
Solyc07g054180.2.1 | Tomato | nucleus | 62.37 | 27.88 |
PGSC0003DMT400047261 | Potato | extracellular | 61.83 | 26.38 |
Protein Annotations
MapMan:22.1.1.2 | InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 |
GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 |
GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | EnsemblPlantsGene:GSMUA_Achr9G23720_001 | EnsemblPlants:GSMUA_Achr9P23720_001 | EnsemblPlants:GSMUA_Achr9T23720_001 |
UniProt:M0U2X9 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF20 | UniParc:UPI000295A064 | SEG:seg |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G23720_001]
Coordinates
chr9:-:28560603..28564445
Molecular Weight (calculated)
21309.5 Da
IEP (calculated)
10.480
GRAVY (calculated)
-1.216
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPDEGFILR EWRRQNAILL EEKERKEKEL RNQIIVEAEE YKHAFYEKRQ LNSETNKKQN REREKLFLAN QENFHANADK QYWKTIAELI PREIANIEKK
101: RGKKDQDKKP SVVIIQGPKP GKPTDLSRMR QILLKLKHTP PPHMKPPPPP PPAAKDGATG ANAGSKQAAP ANSKETPVPS SEGRQA
101: RGKKDQDKKP SVVIIQGPKP GKPTDLSRMR QILLKLKHTP PPHMKPPPPP PPAAKDGATG ANAGSKQAAP ANSKETPVPS SEGRQA
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.