Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P17650_001 | Banana | nucleus | 44.76 | 72.32 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 44.41 | 68.28 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 18.18 | 53.06 |
| GSMUA_Achr11P... | Banana | nucleus | 58.04 | 51.71 |
| TraesCSU01G218200.1 | Wheat | nucleus | 37.06 | 50.96 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 56.29 | 50.47 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 50.0 | 49.14 |
| Zm00001d014898_P001 | Maize | plasma membrane | 48.25 | 48.59 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 49.65 | 47.18 |
| EER89016 | Sorghum | nucleus | 46.85 | 47.02 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 49.65 | 45.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.09 | 45.8 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 49.65 | 45.66 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 55.59 | 45.56 |
| KRH20480 | Soybean | endoplasmic reticulum | 48.25 | 45.54 |
| KRH50011 | Soybean | nucleus | 49.3 | 45.48 |
| KRH21478 | Soybean | nucleus | 49.3 | 45.05 |
| EES11661 | Sorghum | nucleus | 47.2 | 44.85 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 48.6 | 44.84 |
| KRH10839 | Soybean | nucleus | 50.35 | 44.72 |
| Zm00001d001814_P001 | Maize | nucleus | 45.45 | 43.48 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 58.39 | 42.39 |
| Solyc03g006510.2.1 | Tomato | plastid | 45.1 | 42.3 |
| TraesCSU01G101000.3 | Wheat | nucleus | 45.8 | 42.26 |
| CDX81980 | Canola | nucleus | 46.85 | 42.01 |
| Zm00001d026630_P001 | Maize | plasma membrane | 44.76 | 41.97 |
| PGSC0003DMT400057639 | Potato | nucleus | 47.9 | 41.52 |
| Solyc02g078540.2.1 | Tomato | nucleus | 47.55 | 41.34 |
| PGSC0003DMT400033344 | Potato | nucleus | 44.76 | 41.29 |
| KRH22403 | Soybean | nucleus | 46.85 | 40.85 |
| CDY13859 | Canola | nucleus | 45.1 | 40.82 |
| Bra031138.1-P | Field mustard | nucleus | 45.1 | 40.82 |
| KRH26934 | Soybean | nucleus | 45.8 | 40.56 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 52.1 | 39.73 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 47.9 | 39.6 |
| AT2G20760.1 | Thale cress | nucleus | 46.5 | 39.35 |
| CDY31939 | Canola | nucleus | 25.52 | 36.87 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 44.06 | 34.81 |
| CDY05790 | Canola | nucleus | 20.28 | 34.52 |
| Bra036500.1-P | Field mustard | nucleus | 24.83 | 33.81 |
| Solyc07g054180.2.1 | Tomato | nucleus | 47.9 | 32.93 |
| PGSC0003DMT400047261 | Potato | extracellular | 46.15 | 30.28 |
Protein Annotations
| MapMan:22.1.1.2 | InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 |
| GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | EnsemblPlantsGene:GSMUA_Achr3G14280_001 | EnsemblPlants:GSMUA_Achr3P14280_001 | EnsemblPlants:GSMUA_Achr3T14280_001 |
| UniProt:M0SEJ5 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF10 | UniParc:UPI0002963312 | SEG:seg |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G14280_001]
Coordinates
chr3:+:13450292..13453471
Molecular Weight (calculated)
31480.6 Da
IEP (calculated)
4.804
GRAVY (calculated)
-0.869
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSFDGAFD VDDDEVAVGA SVRPFDDDGY IGYDPRLPSQ RFDAFSSLVD DVDSQDPDAD DPSESGDEGI FGSDGPILQS PGEMQPEEGF VLREWRRQNA
101: ILLEEKERKE KEVRNQILAE AEEYKIAFYE KRKLNCEMNK IQIREREKLF LANQENFHAN AYKDYWKAIA ELIPREIPSI EKRRGKKEQE RKPSIVVIQG
201: PKPGKPTDLS RMRQILVKLK HNTPPHLKPL PPPAPAKDGG GGGGGGAKPE TSTNSTSSTY APAKDGAVAA AGAKQETSAN SSTSST
101: ILLEEKERKE KEVRNQILAE AEEYKIAFYE KRKLNCEMNK IQIREREKLF LANQENFHAN AYKDYWKAIA ELIPREIPSI EKRRGKKEQE RKPSIVVIQG
201: PKPGKPTDLS RMRQILVKLK HNTPPHLKPL PPPAPAKDGG GGGGGGAKPE TSTNSTSSTY APAKDGAVAA AGAKQETSAN SSTSST
001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
Arabidopsis Description
CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.