Factsheet for VIT_00s0370g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P23720_001	Banana	nucleus	34.13	68.82
GSMUA_Achr1P17650_001	Banana	nucleus	30.93	65.54
GSMUA_Achr2P18530_001	Banana	cytosol	14.93	57.14
PGSC0003DMT400057639	Potato	nucleus	49.6	56.36
Solyc02g078540.2.1	Tomato	nucleus	49.33	56.23
KRH50011	Soybean	nucleus	46.4	56.13
KRH20480	Soybean	endoplasmic reticulum	45.33	56.11
KRH21478	Soybean	nucleus	46.67	55.91
KRH10839	Soybean	nucleus	48.0	55.9
Solyc03g006510.2.1	Tomato	plastid	45.33	55.74
TraesCSU01G218200.1	Wheat	nucleus	30.13	54.33
PGSC0003DMT400033344	Potato	nucleus	44.53	53.87
VIT_08s0007g02140.t01	Wine grape	nucleus	16.27	53.51
GSMUA_Achr5P20770_001	Banana	cytosol	44.8	52.66
GSMUA_Achr3P14280_001	Banana	nucleus	39.73	52.1
Os06t0731800-01	Rice	nucleus, plasma membrane	40.27	51.89
GSMUA_Achr11P...	Banana	nucleus	44.27	51.71
EER89016	Sorghum	nucleus	38.67	50.88
Zm00001d014898_P001	Maize	plasma membrane	37.87	50.0
EES11661	Sorghum	nucleus	39.73	49.5
GSMUA_Achr4P26100_001	Banana	nucleus	45.87	49.28
VIT_13s0067g00550.t01	Wine grape	nucleus	41.6	48.9
Zm00001d001814_P001	Maize	nucleus	38.93	48.83
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	38.93	48.51
TraesCSU01G101000.3	Wheat	nucleus	38.93	47.1
Zm00001d026630_P001	Maize	plasma membrane	37.6	46.23
TraesCS2A01G590000.2	Wheat	nucleus	37.6	45.34
GSMUA_AchrUn_...	Banana	nucleus	44.27	44.99
TraesCS2B01G594200.1	Wheat	nucleus	37.07	44.84
TraesCS2D01G564200.1	Wheat	nucleus	37.07	44.84
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	37.6	40.75
HORVU7Hr1G119590.1	Barley	nucleus, plastid	38.93	40.33
GSMUA_Achr8P11240_001	Banana	nucleus	41.33	39.34

Protein Annotations

EntrezGene:100854215	wikigene:100854215	MapMan:22.1.1.2	EMBL:AM474720	ProteinID:CAN72815	ProteinID:CAN72815.1
ProteinID:CCB59138	ProteinID:CCB59138.1	InterPro:Clathrin_L-chain	ncoils:Coil	UniProt:F6HWS4	EMBL:FN596284
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030125	GO:GO:0030130
GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0032050	GO:GO:0072583	EntrezGene:LOC100854215
wikigene:LOC100854215	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF7	TIGR:TC66220	UniParc:UPI0002109F85
ArrayExpress:VIT_00s0370g00020	EnsemblPlantsGene:VIT_00s0370g00020	EnsemblPlants:VIT_00s0370g00020.t01	unigene:Vvi.5955	RefSeq:XP_003635272	RefSeq:XP_003635272.1
SEG:seg	:	:	:	:	:

Description

Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:F6HWS4]

Coordinates

chrUn:-:26050652..26053671

Molecular Weight (calculated)

41484.6 Da

IEP (calculated)

4.663

GRAVY (calculated)

-1.089

Length

375 amino acids

Sequence
(BLAST)

001: MSAFDAYSND GEDVRASSNR PFDDDTFVEY DPSLPSRRFD SYASFATADD YAADDAPPAG GFPVEDEVTV DHVSHNVDGV HPLPGMYGFE GSSMADDPNP
101: NFSEDSFSVP IANGNGKPYD ISADNEDIFS SDGPVLPPPT EMQPEEGFIL REWRRQNAIQ LEEKEKREKE MRNQIIEEAE EYKRAFYEKR KVNIETNKTN
201: NREREKLYLA NQEKFHKEAD KQYWKAIAEL IPHEVPNIEK KRGKKDPDKK PSITVIQGPK PGKPTDLSRM RHILVKLKHT PPPHMLPPPP PPAKDAKDGK
301: DAKDGKNAKD GKDKDSKNAK DVKDGKDATP TTGEAPTTPA AKDATSNGSP DTPEQAVPVA AEDQTATESE AAPIA

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.