Factsheet for VIT_13s0067g00550.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0017g00210.t01
VIT_13s0067g00550.t01
VIT_14s0171g00280.t01
VIT_16s0039g01880.t01
VIT_16s0115g00130.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40060.1	VIT_13s0067g00550.t01	AT2G40060.1	21187379
AT2G40060.1	VIT_14s0171g00280.t01	AT3G01780.1	24529374
AT2G40060.1	VIT_16s0039g01880.t01	AT3G03000.1	21798944
AT2G40060.1	VIT_03s0017g00210.t01	AT3G08530.1	21187379
AT2G40060.1	VIT_16s0115g00130.t01	AT3G08530.1	21187379
AT2G40060.1	VIT_19s0027g01340.t01	AT3G08530.1	21187379

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g02140.t01	Wine grape	nucleus	22.88	64.04
CDX69783	Canola	nucleus	37.93	64.02
Bra008989.1-P	Field mustard	nucleus	37.62	63.49
CDX97081	Canola	nucleus	34.8	60.33
CDY07049	Canola	nucleus	41.69	57.33
Bra017039.1-P	Field mustard	nucleus	41.07	56.47
CDY61712	Canola	nucleus	42.63	55.97
Bra000163.1-P	Field mustard	nucleus	44.83	54.17
CDY07629	Canola	nucleus	44.83	54.17
CDY60337	Canola	nucleus	44.83	54.17
AT2G40060.1	Thale cress	nucleus	42.95	53.1
VIT_00s0370g00020.t01	Wine grape	nucleus	48.9	41.6
CDY20508	Canola	nucleus	42.32	28.6

Protein Annotations

EntrezGene:100248438	wikigene:100248438	MapMan:22.1.1.2	EMBL:AM446594	ProteinID:CAN69697	ProteinID:CAN69697.1
ProteinID:CCB49875	ProteinID:CCB49875.1	InterPro:Clathrin_L-chain	ncoils:Coil	UniProt:F6HCE0	EMBL:FN595514
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009504	GO:GO:0009536	GO:GO:0009941	GO:GO:0016020
GO:GO:0016192	GO:GO:0030125	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
GO:GO:0032050	GO:GO:0042802	GO:GO:0072583	EntrezGene:LOC100248438	wikigene:LOC100248438	PFAM:PF01086
PANTHER:PTHR10639	PANTHER:PTHR10639:SF10	TIGR:TC52436	TIGR:TC66698	UniParc:UPI0001984568	ArrayExpress:VIT_13s0067g00550
EnsemblPlantsGene:VIT_13s0067g00550	EnsemblPlants:VIT_13s0067g00550.t01	unigene:Vvi.24739	unigene:Vvi.3482	RefSeq:XP_002269465	RefSeq:XP_002269465.1
SEG:seg	:	:	:	:	:

Description

Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:F6HCE0]

Coordinates

chr13:+:304987..309160

Molecular Weight (calculated)

34924.5 Da

IEP (calculated)

4.968

GRAVY (calculated)

-0.799

Length

319 amino acids

Sequence
(BLAST)

001: MASFTDSFGQ PGDESRPAAA ASTRPFDDDG YLGYDPRLPS QRFDSFTNFA DSESVKESVE DSPIYNSASY AAADDVFTSQ PIPDTPSPPP IYVSGGGFAA
101: DQHEFSSFSP EANGKVFDEG FAGSDGPILP PPTEMQSEEG FALREWRRQN AITLEEKEKR EKELLSQIID EADEYKVEFY RRRTITCETN KTTNREKEKL
201: FIANQEKFHA EADKNYWKAI AELIPNEVPA IEKKRGKKDQ DKKPSIVVIQ GPKPGKPTDL SRMRQILLKL KHNTPPHLKP SPPPAPAPAK DTKTGNSASA
301: AAPAKAAVGP SPPEAVAAA

Best Arabidopsis Sequence Match ( AT2G40060.1 )
(BLAST)

001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA

Arabidopsis Description

CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.