CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67529
CDX87673
CDX99702
CDY07049
CDY07629
CDY13364
CDY20508
CDY27661
CDY37153
CDY58544
CDY60337
CDY61712

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40060.1	CDY07049	AT2G40060.1	21187379
AT2G40060.1	CDY07629	AT2G40060.1	21187379
AT2G40060.1	CDY20508	AT2G40060.1	21187379
AT2G40060.1	CDY60337	AT2G40060.1	21187379
AT2G40060.1	CDY61712	AT2G40060.1	21187379
AT2G40060.1	CDX87673	AT3G01780.1	24529374
AT2G40060.1	CDY37153	AT3G01780.1	24529374
AT2G40060.1	CDY58544	AT3G03000.1	21798944
AT2G40060.1	CDX67529	AT5G42080.1	20231465
AT2G40060.1	CDX99702	AT5G42080.1	20231465
AT2G40060.1	CDY13364	AT5G42080.1	20231465
AT2G40060.1	CDY27661	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69783	Canola	nucleus	31.14	77.78
CDX97081	Canola	nucleus	30.3	77.72
CDY61712	Canola	nucleus	38.35	74.49
CDY07049	Canola	nucleus	36.02	73.28
CDY07629	Canola	nucleus	39.41	70.45
CDY60337	Canola	nucleus	39.41	70.45
AT2G40060.1	Thale cress	nucleus	36.65	67.05
VIT_13s0067g00550.t01	Wine grape	nucleus	28.6	42.32
CDX95307	Canola	nucleus	22.46	42.23
CDY23170	Canola	nucleus	22.25	41.02
CDX81980	Canola	nucleus	25.0	36.99
CDY13859	Canola	nucleus	24.15	36.08
CDY31939	Canola	nucleus	13.98	33.33
CDY05790	Canola	nucleus	9.96	27.98

Protein Annotations

MapMan:22.1.1.2	Gene3D:3.10.450.40	GO:A0A078G7B3	UniProt:A0A078G7B3	EnsemblPlants:CDY20508	ProteinID:CDY20508
ProteinID:CDY20508.1	InterPro:Clathrin_L-chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030130
GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	EnsemblPlantsGene:GSBRNA2T00012617001	PFAM:PF01086	PFAM:PF11523
PANTHER:PTHR10639	PANTHER:PTHR10639:SF19	UniParc:UPI0004EE210A	SEG:seg	:	:

Description

BnaC04g05360DClathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A078G7B3]

Coordinates

chrLK032108:+:628284..630481

Molecular Weight (calculated)

53163.1 Da

IEP (calculated)

8.961

GRAVY (calculated)

-0.721

Length

472 amino acids

Sequence
(BLAST)

001: MNKEETALSL ETESDPVAWG SIAKQNSETE AGASTWVTRD KGNSKTESDP ASWGTQASGE FQPRSIHLLA AHREAGPMVV VVVQTGRGTV LLGPLDSWWN
101: NVCRLISTQR LRCFFVVSTD GVKQYFSYRK CINNYLVEKY PNLAEEFIAK YYKKRDNANR VRNSKTTTHH LETPPLVKKS RLVMEVKTLR HKLLVMEVEI
201: LRHRLNLLVT EVKTPRHSLR LRLNLLVGKM SVFDDSFVIL GDDASESAPV SAYDGSVHVD DSTDDVFAAP SSDYGNEDGV FGSSGGHDGP ILPPPSEMES
301: DEGTALREWR RQNAIQLEEK EKREKELRNQ IIEEANQFKE EFRKKRELAC ENNKAANREK EKLYVETQEK LYAEASKNYW KAIAELVPKE VPTIEKRRGK
401: KKEDDPKKPT ISVIQGPKPG KPTDLSRMRQ ILLKLKQNPP THLKLAPQPS SEAAAPPKNV PETKPTEPVA AA

Best Arabidopsis Sequence Match ( AT2G40060.1 )
(BLAST)

001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA

Arabidopsis Description

CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.