Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61712 | Canola | nucleus | 69.77 | 74.07 |
| CDY07049 | Canola | nucleus | 65.12 | 72.41 |
| Bra017039.1-P | Field mustard | nucleus | 63.95 | 71.12 |
| Bra000163.1-P | Field mustard | nucleus | 72.48 | 70.83 |
| CDY07629 | Canola | nucleus | 72.48 | 70.83 |
| CDY60337 | Canola | nucleus | 70.16 | 68.56 |
| AT3G51890.1 | Thale cress | nucleus | 45.35 | 45.35 |
| VIT_13s0067g00550.t01 | Wine grape | nucleus | 53.1 | 42.95 |
| CDY20508 | Canola | nucleus | 67.05 | 36.65 |
| AT2G20760.1 | Thale cress | nucleus | 44.57 | 34.02 |
Protein Annotations
| MapMan:22.1.1.2 | EntrezGene:818594 | UniProt:A0A178W0Q3 | ProteinID:AAB95291.1 | ProteinID:AEC09770.1 | EMBL:AK226476 |
| ArrayExpress:AT2G40060 | EnsemblPlantsGene:AT2G40060 | RefSeq:AT2G40060 | TAIR:AT2G40060 | RefSeq:AT2G40060-TAIR-G | EnsemblPlants:AT2G40060.1 |
| TAIR:AT2G40060.1 | EMBL:AY088269 | EMBL:AY092995 | EMBL:AY114610 | Unigene:At.22455 | InterPro:Clathrin_L-chain |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005856 | GO:GO:0005886 |
| GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009504 | GO:GO:0009524 |
| GO:GO:0009536 | GO:GO:0009941 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030125 | GO:GO:0030130 |
| GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032050 | GO:GO:0042802 | GO:GO:0072583 |
| RefSeq:NP_565921.1 | UniProt:O04209 | ProteinID:OAP11291.1 | PFAM:PF01086 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10639 |
| PANTHER:PTHR10639:SF19 | UniParc:UPI000009DD6F | SEG:seg | : | : | : |
Description
CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
Coordinates
chr2:+:16726424..16728207
Molecular Weight (calculated)
28838.4 Da
IEP (calculated)
4.626
GRAVY (calculated)
-0.917
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.