Factsheet for Bra000163.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000163.1-P
Bra017039.1-P
Bra021379.1-P
Bra022067.1-P
Bra025448.1-P
Bra028525.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40060.1	Bra000163.1-P	AT2G40060.1	21187379
AT2G40060.1	Bra017039.1-P	AT2G40060.1	21187379
AT2G40060.1	Bra022067.1-P	AT3G01780.1	24529374
AT2G40060.1	Bra021379.1-P	AT3G03000.1	21798944
AT2G40060.1	Bra025448.1-P	AT5G42080.1	20231465
AT2G40060.1	Bra028525.1-P	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07629	Canola	nucleus	100.0	100.0
Bra017039.1-P	Field mustard	nucleus	75.76	86.21
Bra008989.1-P	Field mustard	nucleus	56.06	78.31
AT2G40060.1	Thale cress	nucleus	70.83	72.48
VIT_13s0067g00550.t01	Wine grape	nucleus	54.17	44.83
Bra033472.1-P	Field mustard	nucleus	41.29	43.43
Bra031138.1-P	Field mustard	nucleus	46.59	38.92
Bra036500.1-P	Field mustard	nucleus	26.89	33.81

Protein Annotations

MapMan:22.1.1.2	EnsemblPlantsGene:Bra000163	EnsemblPlants:Bra000163.1	EnsemblPlants:Bra000163.1-P	InterPro:Clathrin_L-chain	ncoils:Coil
GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0016020	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
UniProt:M4C7I5	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF19	UniParc:UPI0002540258	SEG:seg

Description

AT2G40060 (E=1e-108) | protein binding / structural molecule

Coordinates

chrA03:+:9650745..9652374

Molecular Weight (calculated)

29199.9 Da

IEP (calculated)

4.847

GRAVY (calculated)

-0.921

Length

264 amino acids

Sequence
(BLAST)

001: MSVFDDSFVI LGDDASESVP VSGSFDTTTD HSFSAYDGSG QVDDPIDDVF AAPSSDYGAY SNGDDVFGSN GGHDGPILPP PSEMESDEGS ALREWRRQNA
101: IQLEEKEKKE KELRNQIIEE ANQFKEDFHK KRELTCENNK AANREKEKLY METQEKFYAE ASKNYWKAIA ELVPKEVPTI EKRRGKKEQD PKKPTISVIQ
201: GPKPGKPTDL SRMRQILLKL KQNPPAHLKL APQPPPEAAA ATTTAATPPK NVPETKPTEA VTAA

Best Arabidopsis Sequence Match ( AT2G40060.1 )
(BLAST)

001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA

Arabidopsis Description

CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.