Factsheet for Bra031138.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13859	Canola	nucleus	100.0	100.0
GSMUA_Achr9P23720_001	Banana	nucleus	37.66	63.98
GSMUA_Achr1P17650_001	Banana	nucleus	33.86	60.45
AT2G20760.1	Thale cress	nucleus	62.66	58.58
Bra008989.1-P	Field mustard	nucleus	33.54	56.08
TraesCSU01G218200.1	Wheat	nucleus	34.49	52.4
GSMUA_Achr2P18530_001	Banana	cytosol	15.51	50.0
Bra036500.1-P	Field mustard	nucleus	32.59	49.05
Bra017039.1-P	Field mustard	nucleus	35.76	48.71
Zm00001d014898_P001	Maize	plasma membrane	43.04	47.89
Os06t0731800-01	Rice	nucleus, plasma membrane	43.99	47.77
Bra000163.1-P	Field mustard	nucleus	38.92	46.59
EER89016	Sorghum	nucleus	41.77	46.32
TraesCSU01G101000.3	Wheat	nucleus	44.62	45.48
KRH22403	Soybean	nucleus	46.84	45.12
GSMUA_Achr3P14280_001	Banana	nucleus	40.82	45.1
GSMUA_Achr11P...	Banana	nucleus	45.57	44.86
GSMUA_Achr5P20770_001	Banana	cytosol	44.94	44.51
Zm00001d001814_P001	Maize	nucleus	42.09	44.48
KRH26934	Soybean	nucleus	45.25	44.27
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	42.09	44.19
Bra033472.1-P	Field mustard	nucleus	34.81	43.82
TraesCS2B01G594200.1	Wheat	nucleus	42.41	43.23
EES11661	Sorghum	nucleus	40.51	42.52
TraesCS2D01G564200.1	Wheat	nucleus	41.46	42.26
TraesCS2A01G590000.2	Wheat	nucleus	41.46	42.12
GSMUA_Achr4P26100_001	Banana	nucleus	45.89	41.55
GSMUA_AchrUn_...	Banana	nucleus	45.57	39.02
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	42.72	39.02
Zm00001d026630_P001	Maize	plasma membrane	37.03	38.36
HORVU7Hr1G119590.1	Barley	nucleus, plastid	42.41	37.02
Solyc07g054180.2.1	Tomato	nucleus	48.1	36.54
GSMUA_Achr8P11240_001	Banana	nucleus	44.94	36.04
PGSC0003DMT400047261	Potato	extracellular	49.05	35.55

Protein Annotations

MapMan:22.1.1.2	EnsemblPlantsGene:Bra031138	EnsemblPlants:Bra031138.1	EnsemblPlants:Bra031138.1-P	InterPro:Clathrin_L-chain	ncoils:Coil
GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0016020	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
UniProt:M4EQR5	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF8	UniParc:UPI00025428FE	SEG:seg

Description

AT2G20760 (E=4e-072) | protein binding / structural molecule

Coordinates

chrA09:+:32320934..32322175

Molecular Weight (calculated)

34741.3 Da

IEP (calculated)

5.802

GRAVY (calculated)

-1.191

Length

316 amino acids

Sequence
(BLAST)

001: MATFDDGDFP AAQTHSPTEH DDSFMSYENF SEAPPSAGFS SFNGDGSENP ASPNGYGFAA ASSPNGNGDA GIFASDGPTL PDPNEMREEG FQRREWRRQN
101: ALHLEEKEKK EKEMRNQLIA EADEYKKAFY EKREKTIETN KADNREREKL YWVNQEKFHK EVDKHYWKAI AELIPREVPN IEKKRGKKDP DKKPSVMVIQ
201: GPKPGKPTDL GRMRQIFLKL KTNPPPHMMP PPPPPAKDAK DAKEGKDAKG GKDAKDGKPA AEKKAPEAET KAAEEKPASP AKDASAETAK PEAAVTAAAS
301: GEGEKPVVEA EGAKAE

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.