Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23170 | Canola | nucleus | 96.41 | 94.53 |
| AT3G51890.1 | Thale cress | nucleus | 66.53 | 64.73 |
| Bra008989.1-P | Field mustard | nucleus | 39.44 | 52.38 |
| VIT_08s0007g02140.t01 | Wine grape | nucleus | 22.31 | 49.12 |
| Solyc09g014450.2.1 | Tomato | plastid | 42.63 | 45.34 |
| PGSC0003DMT400021919 | Potato | mitochondrion | 41.83 | 44.49 |
| Bra017039.1-P | Field mustard | nucleus | 40.64 | 43.97 |
| KRH75865 | Soybean | plastid | 44.22 | 42.69 |
| Bra000163.1-P | Field mustard | nucleus | 43.43 | 41.29 |
| Bra031138.1-P | Field mustard | nucleus | 43.82 | 34.81 |
| Bra036500.1-P | Field mustard | nucleus | 25.9 | 30.95 |
Protein Annotations
| MapMan:22.1.1.2 | EnsemblPlantsGene:Bra033472 | EnsemblPlants:Bra033472.1 | EnsemblPlants:Bra033472.1-P | InterPro:Clathrin_L-chain | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 |
| UniProt:M4EXD5 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF19 | UniParc:UPI000254386A | SEG:seg |
Description
AT3G51890 (E=1e-091) | protein binding / structural molecule
Coordinates
chrA04:+:4406730..4407963
Molecular Weight (calculated)
28379.0 Da
IEP (calculated)
5.590
GRAVY (calculated)
-1.135
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSLSNDDS QLGESNRSAE VDGGEGGNYT AYESRFQSQR FDSSFSNFEK DLAGGGDSSP YSNQEDISSP QRELPETQSP PLKNSSDDTN GPILPPPSAM
101: EKEEGFALRE WRRLNALRLE EKEKKEKEMV QEIIEAAEQY KAEFYSKRSI TIENNRKTNR EKEKLFLESQ EKFYAEADKN SWKAIAELIP REVPVLEKKG
201: KKKQASVTVI QGPKPGKPTD LSRMRQVITR LKHNPPSHMK PKVPTPSEVD P
101: EKEEGFALRE WRRLNALRLE EKEKKEKEMV QEIIEAAEQY KAEFYSKRSI TIENNRKTNR EKEKLFLESQ EKFYAEADKN SWKAIAELIP REVPVLEKKG
201: KKKQASVTVI QGPKPGKPTD LSRMRQVITR LKHNPPSHMK PKVPTPSEVD P
001: MSSTLSNEES GLGDSNRSTE VDGGDGGNFT AYESRFQSQR FDSSFSNFDS QPEKESDLPC GDSSPRPETQ SPPSINSFDD TNDSILPPPS AMEKEEGFAL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
Arabidopsis Description
Clathrin light chain 3 [Source:UniProtKB/Swiss-Prot;Acc:F4J5M9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.