Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23170 | Canola | nucleus | 67.05 | 67.58 |
| Bra033472.1-P | Field mustard | nucleus | 64.73 | 66.53 |
| CDX95307 | Canola | nucleus | 63.95 | 65.74 |
| PGSC0003DMT400021919 | Potato | mitochondrion | 44.96 | 49.15 |
| Solyc09g014450.2.1 | Tomato | plastid | 44.96 | 49.15 |
| AT2G40060.1 | Thale cress | nucleus | 45.35 | 45.35 |
| VIT_08s0007g02140.t01 | Wine grape | nucleus | 18.99 | 42.98 |
| KRH75865 | Soybean | plastid | 41.86 | 41.54 |
| AT2G20760.1 | Thale cress | nucleus | 41.86 | 31.95 |
Protein Annotations
| MapMan:22.1.1.2 | EntrezGene:824352 | ProteinID:AAC14416.1 | ProteinID:AEE78859.1 | EMBL:AK228229 | ArrayExpress:AT3G51890 |
| EnsemblPlantsGene:AT3G51890 | RefSeq:AT3G51890 | TAIR:AT3G51890 | RefSeq:AT3G51890-TAIR-G | EnsemblPlants:AT3G51890.1 | TAIR:AT3G51890.1 |
| InterPro:Clathrin_L-chain | ncoils:Coil | UniProt:F4J5M9 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016192 | GO:GO:0030125 | GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 |
| GO:GO:0032050 | GO:GO:0072583 | RefSeq:NP_566956.4 | PFAM:PF01086 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF19 | UniParc:UPI0001A7B090 | SEG:seg |
Description
Clathrin light chain 3 [Source:UniProtKB/Swiss-Prot;Acc:F4J5M9]
Coordinates
chr3:-:19249475..19251112
Molecular Weight (calculated)
29184.9 Da
IEP (calculated)
5.044
GRAVY (calculated)
-1.067
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTLSNEES GLGDSNRSTE VDGGDGGNFT AYESRFQSQR FDSSFSNFDS QPEKESDLPC GDSSPRPETQ SPPSINSFDD TNDSILPPPS AMEKEEGFAL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
101: REWRRLNALR LEEKEKEEKE MVQQILEAAE QYKAEFYSKR NVTIENNKKL NREKEKFFLE NQEKFYAEAD KNNWKAIAEL IPREVPVIEN RGNKKKTATI
201: TVIQGPKPGK PTDLSRMRQV LTKLKHNPPT HMKPKLPSPS GADPNVSVSE QVTVTEKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.