Factsheet for PGSC0003DMT400021919

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g014450.2.1	Tomato	plastid	79.24	79.24
VIT_08s0007g02140.t01	Wine grape	nucleus	23.73	49.12
KRH75865	Soybean	plastid	50.85	46.15
AT3G51890.1	Thale cress	nucleus	49.15	44.96
Bra033472.1-P	Field mustard	nucleus	44.49	41.83
CDY23170	Canola	nucleus	44.92	41.41
CDX95307	Canola	nucleus	43.22	40.64
PGSC0003DMT400057639	Potato	nucleus	50.85	36.36
PGSC0003DMT400033344	Potato	nucleus	46.19	35.16
PGSC0003DMT400047261	Potato	extracellular	44.07	23.85

Protein Annotations

EntrezGene:102585812	MapMan:22.1.1.2	InterPro:Clathrin_L-chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192
GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	UniProt:M1AFW4	PFAM:PF01086
EnsemblPlantsGene:PGSC0003DMG400008502	PGSC:PGSC0003DMG400008502	EnsemblPlants:PGSC0003DMT400021919	PANTHER:PTHR10639	PANTHER:PTHR10639:SF19	UniParc:UPI0002951262
RefSeq:XP_006366354.1	SEG:seg	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008502]

Coordinates

chr9:-:167407..171841

Molecular Weight (calculated)

26641.6 Da

IEP (calculated)

8.417

GRAVY (calculated)

-0.916

Length

236 amino acids

Sequence
(BLAST)

001: MSSHVSGTGP PMTPPLDRGG DFEVSTEDSG DYVFGLESVM SEAQFTGENG PILPPPERMV AEEGFALREW RRLNAIRLEE KEKREKEIVR EIIKEAEEYK
101: AEYYRKWKLR CENNIAANRE KEKLFLANQE KFHTEANNAY WRTIGELIPK EVPTIEKKGK KDKEKQPFIN VIQGPKPGRP TELSRMRQIL VKLKHNPPDH
201: MKPSAKPSSE PGKDATTGIE TSVASSAKPQ ATTAAP

Best Arabidopsis Sequence Match ( AT2G40060.1 )
(BLAST)

001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA

Arabidopsis Description

CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.