Factsheet for PGSC0003DMT400057639

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078540.2.1	Tomato	nucleus	84.55	84.8
GSMUA_Achr9P23720_001	Banana	nucleus	35.45	62.9
GSMUA_Achr1P17650_001	Banana	nucleus	33.64	62.71
PGSC0003DMT400033344	Potato	nucleus	57.27	60.97
TraesCSU01G218200.1	Wheat	nucleus	34.24	54.33
KRH20480	Soybean	endoplasmic reticulum	47.88	52.15
KRH21478	Soybean	nucleus	49.39	52.08
KRH10839	Soybean	nucleus	50.3	51.55
PGSC0003DMT400021919	Potato	mitochondrion	36.36	50.85
KRH50011	Soybean	nucleus	47.58	50.65
Os06t0731800-01	Rice	nucleus, plasma membrane	44.55	50.52
GSMUA_Achr2P18530_001	Banana	cytosol	14.85	50.0
VIT_00s0370g00020.t01	Wine grape	nucleus	56.36	49.6
Zm00001d014898_P001	Maize	plasma membrane	41.82	48.59
EER89016	Sorghum	nucleus	41.52	48.07
GSMUA_Achr3P14280_001	Banana	nucleus	41.52	47.9
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	43.64	47.84
TraesCSU01G101000.3	Wheat	nucleus	43.94	46.77
GSMUA_Achr11P...	Banana	nucleus	45.45	46.73
Zm00001d001814_P001	Maize	nucleus	42.12	46.49
GSMUA_Achr5P20770_001	Banana	cytosol	44.85	46.4
EES11661	Sorghum	nucleus	42.12	46.18
TraesCS2B01G594200.1	Wheat	nucleus	42.42	45.16
TraesCS2A01G590000.2	Wheat	nucleus	42.42	45.02
GSMUA_Achr4P26100_001	Banana	nucleus	47.27	44.7
Zm00001d026630_P001	Maize	plasma membrane	40.91	44.26
TraesCS2D01G564200.1	Wheat	nucleus	41.52	44.19
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	42.12	40.17
HORVU7Hr1G119590.1	Barley	nucleus, plastid	42.73	38.95
GSMUA_AchrUn_...	Banana	nucleus	43.33	38.75
GSMUA_Achr8P11240_001	Banana	nucleus	43.64	36.55
PGSC0003DMT400047261	Potato	extracellular	43.64	33.03

Protein Annotations

EntrezGene:102601027	MapMan:22.1.1.2	InterPro:Clathrin_L-chain	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030130
GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	UniProt:M1C1F1	PFAM:PF01086	EnsemblPlantsGene:PGSC0003DMG400022381
PGSC:PGSC0003DMG400022381	EnsemblPlants:PGSC0003DMT400057639	PANTHER:PTHR10639	PANTHER:PTHR10639:SF8	UniParc:UPI00029611CA	RefSeq:XP_006347068.1
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400022381]

Coordinates

chr2:-:34212948..34216838

Molecular Weight (calculated)

36152.7 Da

IEP (calculated)

5.124

GRAVY (calculated)

-1.064

Length

330 amino acids

Sequence
(BLAST)

001: MAAFDAFSMD GEAPAPAAST PFDDGDYDGS YTAFSNADTP PFHGSGGFGG DYEEVTVEHV SHTVDSPDPY GYGSDSFPNQ TDSFGASGAP ISNGNGKPYD
101: LGEDTEGIFS SDGPVLPPPN EMREEGFALR EWRRQNAIRL EEKEKREKEI RIQIIEEGEE YKKAFYEKRN LSIETNKTTN REKEKLYLTS QEKFHKEADK
201: QYWKAIAELI PKEVPSIEKK GRKKDQDKKP SITVVQGPKP GKPTDLSRMR HILLKLKHTP PPHMIPPPPA PAKDAKVGKD GKDTKDAKAG KDGKDTKNAK
301: DTAAPNGTSD APPSDAKVTT QTSEEPAAAE

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.