Factsheet for GSMUA_Achr4P26100_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P23720_001	Banana	nucleus	36.96	69.35
GSMUA_Achr1P17650_001	Banana	nucleus	34.67	68.36
GSMUA_Achr5P20770_001	Banana	cytosol	59.89	65.52
GSMUA_AchrUn_...	Banana	nucleus	69.05	65.31
GSMUA_Achr11P...	Banana	nucleus	58.45	63.55
GSMUA_Achr2P18530_001	Banana	cytosol	16.91	60.2
TraesCSU01G218200.1	Wheat	nucleus	34.1	57.21
GSMUA_Achr3P14280_001	Banana	nucleus	45.56	55.59
GSMUA_Achr8P11240_001	Banana	nucleus	60.17	53.3
Os06t0731800-01	Rice	nucleus, plasma membrane	44.13	52.92
Zm00001d014898_P001	Maize	plasma membrane	42.12	51.76
EER89016	Sorghum	nucleus	41.83	51.23
KRH21478	Soybean	nucleus	45.56	50.8
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	43.27	50.17
KRH50011	Soybean	nucleus	44.41	50.0
KRH10839	Soybean	nucleus	46.13	50.0
KRH20480	Soybean	endoplasmic reticulum	42.41	48.84
Zm00001d001814_P001	Maize	nucleus	41.83	48.83
TraesCSU01G101000.3	Wheat	nucleus	42.69	48.06
EES11661	Sorghum	nucleus	40.97	47.51
PGSC0003DMT400057639	Potato	nucleus	44.7	47.27
TraesCS2B01G594200.1	Wheat	nucleus	41.83	47.1
PGSC0003DMT400033344	Potato	nucleus	41.83	47.1
TraesCS2A01G590000.2	Wheat	nucleus	41.83	46.95
Solyc02g078540.2.1	Tomato	nucleus	44.13	46.81
TraesCS2D01G564200.1	Wheat	nucleus	41.55	46.77
Solyc03g006510.2.1	Tomato	plastid	40.69	46.56
CDX81980	Canola	nucleus	42.12	46.08
Bra031138.1-P	Field mustard	nucleus	41.55	45.89
CDY13859	Canola	nucleus	41.55	45.89
VIT_00s0370g00020.t01	Wine grape	nucleus	49.28	45.87
Zm00001d026630_P001	Maize	plasma membrane	39.26	44.92
AT2G20760.1	Thale cress	nucleus	40.69	42.01
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	41.55	41.91
KRH26934	Soybean	nucleus	38.4	41.49
KRH22403	Soybean	nucleus	38.97	41.46
HORVU7Hr1G119590.1	Barley	nucleus, plastid	41.26	39.78
CDY31939	Canola	nucleus	22.35	39.39
Bra036500.1-P	Field mustard	nucleus	22.06	36.67
Solyc07g054180.2.1	Tomato	nucleus	43.27	36.3
PGSC0003DMT400047261	Potato	extracellular	42.41	33.95
CDY05790	Canola	nucleus	16.33	33.93

Protein Annotations

MapMan:22.1.1.2	InterPro:Clathrin_L-chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030130
GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	EnsemblPlantsGene:GSMUA_Achr4G26100_001	EnsemblPlants:GSMUA_Achr4P26100_001	EnsemblPlants:GSMUA_Achr4T26100_001
UniProt:M0SS71	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF8	UniParc:UPI00029674F1	SEG:seg

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G26100_001]

Coordinates

chr4:+:25511664..25515820

Molecular Weight (calculated)

38543.5 Da

IEP (calculated)

4.934

GRAVY (calculated)

-1.135

Length

349 amino acids

Sequence
(BLAST)

001: MSLEFDAFGN DVEEEEAVGP GSAASRPFDD GYLGYDPGLS SQRYEDYSSF AAGEDAKDPV DDNLPPASTG FPSDMSGGGG GEYGFHPVDA PVHHHHGGGG
101: SMPDSPEGYG FSSAPSAFAM PEAEVKSYGA EENGEIFTSD GPILPEPDQM REEGFLLREW RRQNTMQLEE KERKEKERRN EIISEAEEYK RAFYEKRKLN
201: CETNKTQNRE REKLYLANQE KFHANADKQY WKAIAELVPH EIANIEKRRG KKEQDKKPSI TVIQGPKPGK PTDLSRMRQL LVKLKHTPPP HMKPPPPPAP
301: EPAKDAKDGK QPSSPAKDAK ANGTTASPKE ESPKLEEQAD KAPAPTPDA

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.