Factsheet for Zm00001d026630_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001814_P001	Maize	nucleus	82.3	83.95
EES11661	Sorghum	nucleus	81.31	82.39
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	70.16	71.1
TraesCS2A01G590000.2	Wheat	nucleus	64.59	63.34
TraesCS2B01G594200.1	Wheat	nucleus	63.93	62.9
TraesCS2D01G564200.1	Wheat	nucleus	63.61	62.58
GSMUA_Achr9P23720_001	Banana	nucleus	37.05	60.75
GSMUA_Achr1P17650_001	Banana	nucleus	34.43	59.32
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	63.93	56.36
Zm00001d014898_P001	Maize	plasma membrane	45.57	48.94
KRH21478	Soybean	nucleus	48.2	46.96
KRH10839	Soybean	nucleus	48.2	45.65
GSMUA_Achr3P14280_001	Banana	nucleus	41.97	44.76
Solyc03g006510.2.1	Tomato	plastid	44.59	44.59
KRH50011	Soybean	nucleus	44.92	44.19
KRH20480	Soybean	endoplasmic reticulum	43.61	43.89
GSMUA_Achr5P20770_001	Banana	cytosol	45.25	43.26
PGSC0003DMT400033344	Potato	nucleus	43.61	42.9
GSMUA_Achr2P18530_001	Banana	cytosol	13.77	42.86
GSMUA_Achr11P...	Banana	nucleus	44.26	42.06
Solyc02g078540.2.1	Tomato	nucleus	44.59	41.34
PGSC0003DMT400057639	Potato	nucleus	44.26	40.91
GSMUA_Achr4P26100_001	Banana	nucleus	44.92	39.26
CDX81980	Canola	nucleus	40.33	38.56
AT2G20760.1	Thale cress	nucleus	42.62	38.46
KRH22403	Soybean	nucleus	41.31	38.41
VIT_00s0370g00020.t01	Wine grape	nucleus	46.23	37.6
Bra031138.1-P	Field mustard	nucleus	38.36	37.03
CDY13859	Canola	nucleus	38.36	37.03
CDY31939	Canola	nucleus	23.93	36.87
KRH26934	Soybean	nucleus	39.02	36.84
GSMUA_AchrUn_...	Banana	nucleus	44.26	36.59
Zm00001d019596_P001	Maize	nucleus	40.33	35.24
Bra036500.1-P	Field mustard	nucleus	24.26	35.24
GSMUA_Achr8P11240_001	Banana	nucleus	42.62	32.99
CDY05790	Canola	nucleus	18.03	32.74
Solyc07g054180.2.1	Tomato	nucleus	42.95	31.49
PGSC0003DMT400047261	Potato	extracellular	42.95	30.05

Protein Annotations

EntrezGene:100216721	MapMan:22.1.1.2	ProteinID:AQK47294.1	UniProt:B4FJF0	EMBL:BT037238	InterPro:Clathrin_L-chain
ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659
GO:GO:0031410	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF12	UniParc:UPI00017B6F4D	EnsemblPlantsGene:Zm00001d026630
EnsemblPlants:Zm00001d026630_P001	EnsemblPlants:Zm00001d026630_T001	SEG:seg	:	:	:

Description

Clathrin light chain 2

Coordinates

chr10:+:149187927..149191706

Molecular Weight (calculated)

32849.2 Da

IEP (calculated)

5.095

GRAVY (calculated)

-0.863

Length

305 amino acids

Sequence
(BLAST)

001: MASFFADDGT DDLPRTTSHP FDSDDFGAAA ADVAAADGYG GYASFAEGGV EEVDEEITVE SDGVPIRHVS GGYSPSPFSP ELEPNGGDGP ILPPPTEMGR
101: DEGILLREWR RKNAMELEKK EQKERELRAQ IIAEAEEFKK AFFEKRIQNC ASNMVNNRER EKIFVASQEK FHAGADKQYW KSISDLIPHE IATIEKRGKK
201: DKDKKPSITV VQGPKPGKPT DLSRMRHILV KLKHAPPPHM LQPPPPAPAA KEGTKDGSAK GGGKDGAKEG GAAAPANGAK QPAESQETTA NGPSEAEKEQ
301: PAASE

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.