Factsheet for Solyc07g054180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047261	Potato	extracellular	88.7	84.63
GSMUA_Achr9P23720_001	Banana	nucleus	27.88	62.37
GSMUA_Achr1P17650_001	Banana	nucleus	25.48	59.89
GSMUA_Achr2P18530_001	Banana	cytosol	12.26	52.04
TraesCSU01G218200.1	Wheat	nucleus	25.72	51.44
Os06t0731800-01	Rice	nucleus, plasma membrane	34.13	48.8
EER89016	Sorghum	nucleus	33.41	48.77
CDX81980	Canola	nucleus	37.02	48.28
KRH22403	Soybean	nucleus	37.98	48.17
Bra031138.1-P	Field mustard	nucleus	36.54	48.1
CDY13859	Canola	nucleus	36.54	48.1
GSMUA_Achr3P14280_001	Banana	nucleus	32.93	47.9
KRH26934	Soybean	nucleus	37.02	47.68
Zm00001d014898_P001	Maize	plasma membrane	32.21	47.18
Solyc03g006510.2.1	Tomato	plastid	33.65	45.9
AT2G20760.1	Thale cress	nucleus	37.26	45.86
Zm00001d001814_P001	Maize	nucleus	32.69	45.48
GSMUA_Achr11P...	Banana	nucleus	35.1	45.48
Solyc09g014450.2.1	Tomato	plastid	25.72	45.34
GSMUA_Achr5P20770_001	Banana	cytosol	34.38	44.83
EES11661	Sorghum	nucleus	32.21	44.52
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	32.21	44.52
Solyc02g078540.2.1	Tomato	nucleus	35.1	44.38
GSMUA_Achr4P26100_001	Banana	nucleus	36.3	43.27
Zm00001d026630_P001	Maize	plasma membrane	31.49	42.95
TraesCSU01G101000.3	Wheat	nucleus	31.97	42.9
CDY31939	Canola	nucleus	19.95	41.92
TraesCS2A01G590000.2	Wheat	nucleus	30.53	40.84
GSMUA_AchrUn_...	Banana	nucleus	35.1	39.57
TraesCS2B01G594200.1	Wheat	nucleus	29.33	39.35
TraesCS2D01G564200.1	Wheat	nucleus	29.09	39.03
Bra036500.1-P	Field mustard	nucleus	19.47	38.57
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	30.29	36.42
HORVU7Hr1G119590.1	Barley	nucleus, plastid	31.49	36.19
GSMUA_Achr8P11240_001	Banana	nucleus	33.89	35.79
CDY05790	Canola	nucleus	12.74	31.55

Protein Annotations

MapMan:22.1.1.2	InterPro:Clathrin_L-chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005829	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0016020	GO:GO:0016192	GO:GO:0030125	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659
GO:GO:0031410	GO:GO:0032050	GO:GO:0072583	UniProt:K4CFW3	PFAM:PF01086	PANTHER:PTHR10639
PANTHER:PTHR10639:SF8	EnsemblPlantsGene:Solyc07g054180.2	EnsemblPlants:Solyc07g054180.2.1	UniParc:UPI000276C3F9	SEG:seg	:

Description

Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:K4CFW3]

Coordinates

chr7:-:62535831..62539486

Molecular Weight (calculated)

45992.5 Da

IEP (calculated)

4.905

GRAVY (calculated)

-1.284

Length

416 amino acids

Sequence
(BLAST)

001: MENFEQSYAD GTEEIPSTAS PFDDHNYDGF DHSQRYEFDV TSAEDGGDVP PPMPSDIDDF SAGEQQHYYH DNMQSPENSG FAPSPNREYQ GSPFHETMEG
101: NQGSDVQSKP YDLGADTDGL FSSGTDGPLL PDPTEMREEG AAFREWRRQN AVYLEEKEKK EKEMRNQIIA EAEEYIRAFY EKRTLNCEST KANNREREKL
201: YLANQEKFHK QAHKQYFKAI AEIIPREVPN IEKRRGKKEE EKKPSVSVIQ GPKPGKPTDL SRMRQLFLKL KQNPPPHMLP PPEKDKDGKD GKDGKDGKDG
301: TKEGKDAKNE KISTPKEAKD GKNEKIATPK GSKDAKNDKS PKGKAANDAK NEENAVQQGS PAAAIDKDIS SVKDADAAQQ GSPAAGSVGT PKESKVDTST
401: TVADGKVAES DSTSTA

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.