CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014898_P001	Maize	plasma membrane	92.63	92.96
Os06t0731800-01	Rice	nucleus, plasma membrane	77.19	75.6
TraesCSU01G218200.1	Wheat	nucleus	51.58	70.67
GSMUA_Achr9P23720_001	Banana	nucleus	43.86	67.2
GSMUA_Achr1P17650_001	Banana	nucleus	39.65	63.84
TraesCSU01G101000.3	Wheat	nucleus	66.67	61.29
HORVU7Hr1G119590.1	Barley	nucleus, plastid	64.21	50.55
GSMUA_Achr11P...	Banana	nucleus	55.44	49.22
EES11661	Sorghum	nucleus	50.88	48.17
GSMUA_Achr5P20770_001	Banana	cytosol	53.68	47.96
GSMUA_Achr2P18530_001	Banana	cytosol	16.49	47.96
GSMUA_Achr3P14280_001	Banana	nucleus	47.02	46.85
KRH50011	Soybean	nucleus	50.53	46.45
KRH20480	Soybean	endoplasmic reticulum	48.77	45.87
KRH21478	Soybean	nucleus	50.18	45.69
KRH10839	Soybean	nucleus	51.58	45.65
Solyc03g006510.2.1	Tomato	plastid	47.72	44.59
CDX81980	Canola	nucleus	47.37	42.32
PGSC0003DMT400033344	Potato	nucleus	45.96	42.26
Solyc02g078540.2.1	Tomato	nucleus	48.77	42.25
GSMUA_Achr4P26100_001	Banana	nucleus	51.23	41.83
Bra031138.1-P	Field mustard	nucleus	46.32	41.77
CDY13859	Canola	nucleus	46.32	41.77
PGSC0003DMT400057639	Potato	nucleus	48.07	41.52
GSMUA_AchrUn_...	Banana	nucleus	51.58	39.84
AT2G20760.1	Thale cress	nucleus	47.02	39.65
KRH26934	Soybean	nucleus	44.21	39.01
CDY31939	Canola	nucleus	27.02	38.89
VIT_00s0370g00020.t01	Wine grape	nucleus	50.88	38.67
OQU88983	Sorghum	nucleus	44.21	38.65
KRH22403	Soybean	nucleus	44.21	38.41
GSMUA_Achr8P11240_001	Banana	nucleus	49.82	36.04
Bra036500.1-P	Field mustard	nucleus	25.96	35.24
CDY05790	Canola	nucleus	20.7	35.12
Solyc07g054180.2.1	Tomato	nucleus	48.77	33.41
PGSC0003DMT400047261	Potato	extracellular	49.12	32.11

Protein Annotations

MapMan:22.1.1.2	EntrezGene:8069249	UniProt:C5Z2N2	InterPro:Clathrin_L-chain	ncoils:Coil	EnsemblPlants:EER89016
ProteinID:EER89016	ProteinID:EER89016.1	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192
GO:GO:0030125	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0032050
GO:GO:0072583	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF20	EnsemblPlantsGene:SORBI_3010G279000	unigene:Sbi.5187
UniParc:UPI0001A898F0	RefSeq:XP_002437649.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:61149465..61152390

Molecular Weight (calculated)

30539.2 Da

IEP (calculated)

8.838

GRAVY (calculated)

-0.702

Length

285 amino acids

Sequence
(BLAST)

001: MATAFESPTS SPAAAPFHDD PFLHFDGSAP AADGFPASPD AYAPSPFGMP HSNGDLHDDP FAAPADSNGG PILPPPTEMG REEGFLLREW RRQNAIHLEK
101: KEKNEKELRS QIIVDAEEFK KAFVEKRKLN VETSKGQNRD REKLFLANQE KFHAGADKQY WKAISELIPH EIANIEKRGA RKDKEKEKKP GIVVIQGPKP
201: GKPTDMARMR QILLKLKHTP PPHMKPPPPP AAATGKDGAP AAAGKDGAKP AAPANGSVPE MEKAAAVAPV PAAAPPAATE PIAAA

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.