Factsheet for Solyc02g078540.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057639	Potato	nucleus	84.8	84.55
GSMUA_Achr9P23720_001	Banana	nucleus	35.87	63.44
Solyc03g006510.2.1	Tomato	plastid	58.66	63.28
GSMUA_Achr1P17650_001	Banana	nucleus	32.52	60.45
TraesCSU01G218200.1	Wheat	nucleus	34.65	54.81
KRH20480	Soybean	endoplasmic reticulum	48.33	52.48
KRH21478	Soybean	nucleus	49.54	52.08
KRH10839	Soybean	nucleus	50.76	51.86
KRH50011	Soybean	nucleus	48.33	51.29
Os06t0731800-01	Rice	nucleus, plasma membrane	44.68	50.52
GSMUA_Achr2P18530_001	Banana	cytosol	14.89	50.0
Solyc09g014450.2.1	Tomato	plastid	35.56	49.58
VIT_00s0370g00020.t01	Wine grape	nucleus	56.23	49.33
Zm00001d014898_P001	Maize	plasma membrane	42.55	49.3
EER89016	Sorghum	nucleus	42.25	48.77
GSMUA_Achr3P14280_001	Banana	nucleus	41.34	47.55
TraesCSU01G101000.3	Wheat	nucleus	44.38	47.1
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	42.86	46.84
GSMUA_Achr5P20770_001	Banana	cytosol	45.29	46.71
EES11661	Sorghum	nucleus	42.25	46.18
Zm00001d001814_P001	Maize	nucleus	41.95	46.15
GSMUA_Achr11P...	Banana	nucleus	44.38	45.48
Zm00001d026630_P001	Maize	plasma membrane	41.34	44.59
TraesCS2A01G590000.2	Wheat	nucleus	41.95	44.37
TraesCS2B01G594200.1	Wheat	nucleus	41.64	44.19
GSMUA_Achr4P26100_001	Banana	nucleus	46.81	44.13
TraesCS2D01G564200.1	Wheat	nucleus	41.03	43.55
GSMUA_AchrUn_...	Banana	nucleus	44.98	40.11
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	41.95	39.88
HORVU7Hr1G119590.1	Barley	nucleus, plastid	43.47	39.5
GSMUA_Achr8P11240_001	Banana	nucleus	43.47	36.29
Solyc07g054180.2.1	Tomato	nucleus	44.38	35.1

Protein Annotations

MapMan:22.1.1.2	InterPro:Clathrin_L-chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005886	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020
GO:GO:0016192	GO:GO:0030125	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
GO:GO:0032050	GO:GO:0072583	UniProt:K4B978	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF8
EnsemblPlantsGene:Solyc02g078540.2	EnsemblPlants:Solyc02g078540.2.1	UniParc:UPI00027682B7	SEG:seg	:	:

Description

Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:K4B978]

Coordinates

chr2:-:43202776..43206708

Molecular Weight (calculated)

36067.6 Da

IEP (calculated)

5.228

GRAVY (calculated)

-1.058

Length

329 amino acids

Sequence
(BLAST)

001: MAAFDAFSMD GEVPAPAAST PFDDGDYDGS YTAFSNADTP PFHGSGGFGG DYDEVTVEHV SHTVDSPDPY GYGSDSFPNQ TGSFGASAAP ISNGNGKPYD
101: LGEDTEGIFS SDGPVLPPPN EMREEGFALR EWRRQNAIRL EEKEKREKEI RSQIIEEGEE YKKAFYEKRN LSIETNKTTN REKEKLYLTS QEKFHKEADK
201: QYWKAIAELI PKEVPSIEKK GRKKDQDKKP SITVVQGPKP GKPTDLSRMR HILLKLKHTP PPHMIPPPPA PAKDAKVGKD GKDTKDAKAG KDGKDTKNAK
301: DTVAPNGTPD APTSDAKVTQ TSEEPTAAE

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.