Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH21478 | Soybean | nucleus | 82.92 | 85.3 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 39.75 | 68.82 |
| KRH50011 | Soybean | nucleus | 63.98 | 66.45 |
| KRH20480 | Soybean | endoplasmic reticulum | 62.42 | 66.34 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 36.02 | 65.54 |
| TraesCSU01G218200.1 | Wheat | nucleus | 36.34 | 56.25 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 16.77 | 55.1 |
| KRH75865 | Soybean | plastid | 42.24 | 52.31 |
| Solyc03g006510.2.1 | Tomato | plastid | 49.07 | 51.8 |
| Zm00001d014898_P001 | Maize | plasma membrane | 45.65 | 51.76 |
| EER89016 | Sorghum | nucleus | 45.65 | 51.58 |
| PGSC0003DMT400033344 | Potato | nucleus | 49.38 | 51.29 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 46.27 | 51.2 |
| Solyc02g078540.2.1 | Tomato | nucleus | 51.86 | 50.76 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 47.2 | 50.5 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 44.72 | 50.35 |
| PGSC0003DMT400057639 | Potato | nucleus | 51.55 | 50.3 |
| EES11661 | Sorghum | nucleus | 46.58 | 49.83 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 48.76 | 49.22 |
| Zm00001d001814_P001 | Maize | nucleus | 45.34 | 48.83 |
| Zm00001d026630_P001 | Maize | plasma membrane | 45.65 | 48.2 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 55.9 | 48.0 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 45.96 | 47.59 |
| TraesCSU01G101000.3 | Wheat | nucleus | 45.65 | 47.42 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 45.34 | 47.1 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 45.34 | 47.1 |
| GSMUA_Achr11P... | Banana | nucleus | 46.89 | 47.04 |
| KRH26934 | Soybean | nucleus | 46.89 | 46.75 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 50.0 | 46.13 |
| KRH22403 | Soybean | nucleus | 46.89 | 46.04 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 46.58 | 43.35 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.07 | 42.82 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 45.65 | 40.61 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 48.76 | 39.85 |
Protein Annotations
| EntrezGene:100818117 | MapMan:22.1.1.2 | EMBL:ACUP02009160 | InterPro:Clathrin_L-chain | ncoils:Coil | EnsemblPlantsGene:GLYMA_15G072100 |
| GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030125 | GO:GO:0030130 |
| GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032050 | GO:GO:0072583 | UniProt:I1MEF8 |
| EnsemblPlants:KRH10839 | ProteinID:KRH10839 | ProteinID:KRH10839.1 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF8 |
| UniParc:UPI000233BE47 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr15:+:5516887..5520287
Molecular Weight (calculated)
35357.5 Da
IEP (calculated)
4.829
GRAVY (calculated)
-1.093
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSFDAFADD LNVNSSSTHH HDEDEDNFSG YGGYSSFTGG FSADGDVAVD HSAAASPEIY GFTDPNPAYS QSPFESATVE NGNENGNGYG QGDGDGDGVF
101: ISDGPVLPPP TEMEPEEGYA LREWRRQNAI QLEEKEKREK EMRLKIIEEA EEYKVAFYEK RKLNVETNKV QNREREKLFL ANQEKFHKEA DKAYWKTIAE
201: LIPREVPNIE KKRSKKDQDK KPSITVIQGP KPGKPTDLSR LRQILLKLKH TPPPHMIPPP PAPAKDAKDG KDSKDGKEKA ASKATGSAAE GAPGSQPKDA
301: TSNGSSEEPQ KEAPATEEQP AA
101: ISDGPVLPPP TEMEPEEGYA LREWRRQNAI QLEEKEKREK EMRLKIIEEA EEYKVAFYEK RKLNVETNKV QNREREKLFL ANQEKFHKEA DKAYWKTIAE
201: LIPREVPNIE KKRSKKDQDK KPSITVIQGP KPGKPTDLSR LRQILLKLKH TPPPHMIPPP PAPAKDAKDG KDSKDGKEKA ASKATGSAAE GAPGSQPKDA
301: TSNGSSEEPQ KEAPATEEQP AA
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.