Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g02140.t01 | Wine grape | nucleus | 23.85 | 54.39 |
| PGSC0003DMT400021919 | Potato | mitochondrion | 46.15 | 50.85 |
| Solyc09g014450.2.1 | Tomato | plastid | 45.38 | 50.0 |
| CDX95307 | Canola | nucleus | 43.08 | 44.62 |
| Bra033472.1-P | Field mustard | nucleus | 42.69 | 44.22 |
| KRH21478 | Soybean | nucleus | 52.69 | 43.77 |
| CDY23170 | Canola | nucleus | 43.08 | 43.75 |
| KRH20480 | Soybean | endoplasmic reticulum | 49.62 | 42.57 |
| KRH10839 | Soybean | nucleus | 52.31 | 42.24 |
| KRH50011 | Soybean | nucleus | 50.0 | 41.94 |
| AT3G51890.1 | Thale cress | nucleus | 41.54 | 41.86 |
| KRH22403 | Soybean | nucleus | 47.31 | 37.5 |
| KRH26934 | Soybean | nucleus | 45.38 | 36.53 |
Protein Annotations
| EntrezGene:100783050 | MapMan:22.1.1.2 | EMBL:ACUP02000511 | InterPro:Clathrin_L-chain | ncoils:Coil | EnsemblPlantsGene:GLYMA_01G115100 |
| GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030125 | GO:GO:0030130 |
| GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | GO:GO:0032050 | GO:GO:0072583 | UniProt:I1J7A5 |
| EnsemblPlants:KRH75865 | ProteinID:KRH75865 | ProteinID:KRH75865.1 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF10 |
| UniParc:UPI0002336C76 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:39801972..39803541
Molecular Weight (calculated)
28817.8 Da
IEP (calculated)
10.499
GRAVY (calculated)
-0.783
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALWPATPS PTSTRSRTPP VTPPRLSVAR RTMPVETSSP PPIYSVAAFS PEQNGKGVDG GFGASDGPIL PPPTNMVAKE GFALREWRMQ NAIQLEEKEK
101: KEKEMRSQII EEAEEYKIEF YRKREVNAEK NKASNREREK LFLASREKFH AEADKNYWKT IGELIPHEVP AIEKRGKKDK VKKPSIAVIQ GPKPGKPTDL
201: SRMRHILLKL KHNLPSHMKP KPPPSETKKD AKTGPLDGAS TSSNPPKVVL VAIPEAVAAA
101: KEKEMRSQII EEAEEYKIEF YRKREVNAEK NKASNREREK LFLASREKFH AEADKNYWKT IGELIPHEVP AIEKRGKKDK VKKPSIAVIQ GPKPGKPTDL
201: SRMRHILLKL KHNLPSHMKP KPPPSETKKD AKTGPLDGAS TSSNPPKVVL VAIPEAVAAA
001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
Arabidopsis Description
CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.