CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10839	Soybean	nucleus	85.3	82.92
GSMUA_Achr9P23720_001	Banana	nucleus	40.58	68.28
KRH50011	Soybean	nucleus	66.13	66.77
GSMUA_Achr1P17650_001	Banana	nucleus	37.7	66.67
KRH20480	Soybean	endoplasmic reticulum	63.26	65.35
TraesCSU01G218200.1	Wheat	nucleus	37.06	55.77
GSMUA_Achr2P18530_001	Banana	cytosol	17.25	55.1
KRH75865	Soybean	plastid	43.77	52.69
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	49.2	51.16
Os06t0731800-01	Rice	nucleus, plasma membrane	47.28	50.86
EER89016	Sorghum	nucleus	45.69	50.18
Zm00001d014898_P001	Maize	plasma membrane	45.37	50.0
PGSC0003DMT400033344	Potato	nucleus	49.52	50.0
Solyc03g006510.2.1	Tomato	plastid	48.56	49.84
EES11661	Sorghum	nucleus	47.92	49.83
Solyc02g078540.2.1	Tomato	nucleus	52.08	49.54
PGSC0003DMT400057639	Potato	nucleus	52.08	49.39
GSMUA_Achr3P14280_001	Banana	nucleus	45.05	49.3
Zm00001d001814_P001	Maize	nucleus	46.96	49.16
Zm00001d026630_P001	Maize	plasma membrane	46.96	48.2
GSMUA_Achr5P20770_001	Banana	cytosol	48.88	47.96
TraesCSU01G101000.3	Wheat	nucleus	46.65	47.1
VIT_00s0370g00020.t01	Wine grape	nucleus	55.91	46.67
KRH26934	Soybean	nucleus	47.92	46.44
GSMUA_Achr11P...	Banana	nucleus	47.28	46.11
TraesCS2B01G594200.1	Wheat	nucleus	45.37	45.81
GSMUA_Achr4P26100_001	Banana	nucleus	50.8	45.56
TraesCS2D01G564200.1	Wheat	nucleus	45.05	45.48
TraesCS2A01G590000.2	Wheat	nucleus	44.73	45.02
KRH22403	Soybean	nucleus	46.33	44.21
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	47.6	43.06
GSMUA_AchrUn_...	Banana	nucleus	48.88	41.46
GSMUA_Achr8P11240_001	Banana	nucleus	50.16	39.85
HORVU7Hr1G119590.1	Barley	nucleus, plastid	45.05	38.95

Protein Annotations

EntrezGene:100813474	MapMan:22.1.1.2	EMBL:ACUP02008356	EMBL:BT096628	UniProt:C6TG81	InterPro:Clathrin_L-chain
ncoils:Coil	EnsemblPlantsGene:GLYMA_13G241300	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192
GO:GO:0030125	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0032050
GO:GO:0072583	EnsemblPlants:KRH21478	ProteinID:KRH21478	ProteinID:KRH21478.1	PFAM:PF01086	PANTHER:PTHR10639
PANTHER:PTHR10639:SF8	UniParc:UPI0001B1699A	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:35130654..35134130

Molecular Weight (calculated)

34581.8 Da

IEP (calculated)

4.763

GRAVY (calculated)

-1.067

Length

313 amino acids

Sequence
(BLAST)

001: MSSFDAFADD LNVNSSSTRQ HDDDEDNFSG YGGYSSFTGG FSADGDVAVD HSAAASPEIY GFTDSNPAYS QSPFESATVE NENGNGYGDG DGVFVSDGPV
101: LPPPTEMEPE EGYALREWRR QNAIQLEEKE KREKEMRLKI IEEAEEYKVA FYEKRKLNVE TNKVQNRERE KLFVANQEKF HKEADKAYWK TIAELIPREV
201: PNIEKKRGKK DQDKKPSITV IQGPKPGKPT DLSRLRQILL KLKHTPPPHM IPPPPAPAKD AKDNKDGKEK AASKATGSAA EGAPDSQPKD ATSNGLTEEP
301: QKEAPATEEQ PAA

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.