Factsheet for PGSC0003DMT400033344

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006510.2.1	Tomato	plastid	78.39	79.67
GSMUA_Achr1P17650_001	Banana	nucleus	34.52	60.45
GSMUA_Achr9P23720_001	Banana	nucleus	36.13	60.22
PGSC0003DMT400057639	Potato	nucleus	60.97	57.27
TraesCSU01G218200.1	Wheat	nucleus	34.52	51.44
GSMUA_Achr2P18530_001	Banana	cytosol	16.13	51.02
KRH21478	Soybean	nucleus	50.0	49.52
KRH10839	Soybean	nucleus	51.29	49.38
KRH20480	Soybean	endoplasmic reticulum	48.06	49.17
Os06t0731800-01	Rice	nucleus, plasma membrane	45.48	48.45
KRH50011	Soybean	nucleus	47.1	47.1
PGSC0003DMT400021919	Potato	mitochondrion	35.16	46.19
TraesCSU01G101000.3	Wheat	nucleus	46.13	46.13
Zm00001d014898_P001	Maize	plasma membrane	42.26	46.13
EER89016	Sorghum	nucleus	42.26	45.96
Zm00001d001814_P001	Maize	nucleus	44.19	45.82
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	43.87	45.18
GSMUA_Achr5P20770_001	Banana	cytosol	46.45	45.14
GSMUA_Achr11P...	Banana	nucleus	46.45	44.86
GSMUA_Achr3P14280_001	Banana	nucleus	41.29	44.76
VIT_00s0370g00020.t01	Wine grape	nucleus	53.87	44.53
EES11661	Sorghum	nucleus	42.9	44.19
Zm00001d026630_P001	Maize	plasma membrane	42.9	43.61
TraesCS2B01G594200.1	Wheat	nucleus	42.26	42.26
GSMUA_Achr4P26100_001	Banana	nucleus	47.1	41.83
TraesCS2A01G590000.2	Wheat	nucleus	41.61	41.48
TraesCS2D01G564200.1	Wheat	nucleus	40.32	40.32
GSMUA_AchrUn_...	Banana	nucleus	45.81	38.48
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	41.29	36.99
HORVU7Hr1G119590.1	Barley	nucleus, plastid	42.26	36.19
GSMUA_Achr8P11240_001	Banana	nucleus	44.52	35.03
PGSC0003DMT400047261	Potato	extracellular	45.81	32.57

Protein Annotations

EntrezGene:102604022	MapMan:22.1.1.2	InterPro:Clathrin_L-chain	ncoils:Coil	GO:GO:0003674	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192
GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	UniProt:M1AYZ7	PFAM:PF01086
EnsemblPlantsGene:PGSC0003DMG400012807	PGSC:PGSC0003DMG400012807	EnsemblPlants:PGSC0003DMT400033344	PANTHER:PTHR10639	PANTHER:PTHR10639:SF8	UniParc:UPI0002967DB7
RefSeq:XP_006343246.1	SEG:seg	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012807]

Coordinates

chr3:-:1993014..1996218

Molecular Weight (calculated)

34098.2 Da

IEP (calculated)

4.921

GRAVY (calculated)

-0.986

Length

310 amino acids

Sequence
(BLAST)

001: MASFDSFSMD GDDSVATAAS PSFHDGNYSA ADTPVYEEVT VDHVSHTVNN PDPYGFGSGQ STPFDDSEAP IADGNGKAYD FGEDSEGIFS SDGPVLPPPS
101: EMREEGLALR EWRRQNAVRL EENEKREKEI RNQIIEEGEE HKKAFYEKRK LNIETNKTNN RDKENVYVTN QEKFHKEADK QYWKAIAELV PNEVPNIEKK
201: GRKKDQEKKP SVTVVQGPKP GKPTDLSRMR HILVKLKHNP PPHMLPPPPA PVKDDKAGKD GKDAKNTKDA ATEGTAPATG DSVPASESSV AQAITQTLEP
301: AATAEVSLFS

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.