Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11661 | Sorghum | nucleus | 87.63 | 87.04 |
| Zm00001d026630_P001 | Maize | plasma membrane | 83.95 | 82.3 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 73.91 | 73.42 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 69.23 | 66.56 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 68.23 | 65.81 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 68.23 | 65.81 |
| GSMUA_Achr9P23720_001 | Banana | nucleus | 38.46 | 61.83 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 68.9 | 59.54 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 35.12 | 59.32 |
| Zm00001d014898_P001 | Maize | plasma membrane | 45.82 | 48.24 |
| KRH21478 | Soybean | nucleus | 49.16 | 46.96 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 43.48 | 45.45 |
| KRH10839 | Soybean | nucleus | 48.83 | 45.34 |
| Solyc03g006510.2.1 | Tomato | plastid | 45.82 | 44.92 |
| PGSC0003DMT400033344 | Potato | nucleus | 45.82 | 44.19 |
| KRH20480 | Soybean | endoplasmic reticulum | 44.48 | 43.89 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 46.82 | 43.89 |
| KRH50011 | Soybean | nucleus | 45.48 | 43.87 |
| GSMUA_Achr11P... | Banana | nucleus | 46.49 | 43.3 |
| PGSC0003DMT400057639 | Potato | nucleus | 46.49 | 42.12 |
| Bra031138.1-P | Field mustard | nucleus | 44.48 | 42.09 |
| CDY13859 | Canola | nucleus | 44.48 | 42.09 |
| CDX81980 | Canola | nucleus | 44.82 | 42.01 |
| Solyc02g078540.2.1 | Tomato | nucleus | 46.15 | 41.95 |
| GSMUA_Achr2P18530_001 | Banana | cytosol | 13.71 | 41.84 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 48.83 | 41.83 |
| AT2G20760.1 | Thale cress | nucleus | 44.48 | 39.35 |
| KRH22403 | Soybean | nucleus | 42.81 | 39.02 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 48.83 | 38.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.82 | 37.94 |
| KRH26934 | Soybean | nucleus | 40.8 | 37.77 |
| CDY31939 | Canola | nucleus | 24.41 | 36.87 |
| Bra036500.1-P | Field mustard | nucleus | 24.41 | 34.76 |
| Zm00001d019596_P001 | Maize | nucleus | 40.13 | 34.38 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 44.82 | 34.01 |
| CDY05790 | Canola | nucleus | 19.06 | 33.93 |
| Solyc07g054180.2.1 | Tomato | nucleus | 45.48 | 32.69 |
| PGSC0003DMT400047261 | Potato | extracellular | 45.15 | 30.96 |
Protein Annotations
| MapMan:22.1.1.2 | UniProt:A0A1D6DT47 | InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 |
| GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 | ProteinID:ONM12064.1 | PFAM:PF01086 |
| PANTHER:PTHR10639 | PANTHER:PTHR10639:SF12 | UniParc:UPI000220BD4C | EnsemblPlantsGene:Zm00001d001814 | EnsemblPlants:Zm00001d001814_P001 | EnsemblPlants:Zm00001d001814_T001 |
| SEG:seg | : | : | : | : | : |
Description
Clathrin light chain 2
Coordinates
chr2:-:1415886..1419759
Molecular Weight (calculated)
32387.5 Da
IEP (calculated)
5.002
GRAVY (calculated)
-0.908
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MASFFADDGA DDLPRATSHP FDSDDFGAAA ADDASAGGYA SFADGGVEEV DEEITVESYG VPIRHVSGGY SPFSPDLEPN GSDGPTLPPP TEMGREEGIL
101: LREWRRKNAM ELEKKEQKEK ELRAQIIAEA EEFKKAFFEK RIQNCASNMV NNREREKIFV ASQEKFHANA DKQYWKSISD LIPHEIATIE KRGKKDKDKK
201: PSVTVIQGPK PGKPTDLSRM RHILVKLKHA PPPHMLQPPP APAAKEGAKD GSKEGGKDGG AKDGAAAPAN DAKQPAESQE TSTANGPSEA EKEQPAASE
101: LREWRRKNAM ELEKKEQKEK ELRAQIIAEA EEFKKAFFEK RIQNCASNMV NNREREKIFV ASQEKFHANA DKQYWKSISD LIPHEIATIE KRGKKDKDKK
201: PSVTVIQGPK PGKPTDLSRM RHILVKLKHA PPPHMLQPPP APAAKEGAKD GSKEGGKDGG AKDGAAAPAN DAKQPAESQE TSTANGPSEA EKEQPAASE
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.