CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20480	Soybean	endoplasmic reticulum	78.39	80.2
KRH21478	Soybean	nucleus	66.77	66.13
GSMUA_Achr1P17650_001	Banana	nucleus	37.74	66.1
GSMUA_Achr9P23720_001	Banana	nucleus	39.35	65.59
KRH10839	Soybean	nucleus	66.45	63.98
GSMUA_Achr2P18530_001	Banana	cytosol	17.74	56.12
TraesCSU01G218200.1	Wheat	nucleus	35.81	53.37
Zm00001d014898_P001	Maize	plasma membrane	46.77	51.06
Os06t0731800-01	Rice	nucleus, plasma membrane	47.74	50.86
EER89016	Sorghum	nucleus	46.45	50.53
KRH75865	Soybean	plastid	41.94	50.0
GSMUA_Achr3P14280_001	Banana	nucleus	45.48	49.3
Solyc02g078540.2.1	Tomato	nucleus	51.29	48.33
Solyc03g006510.2.1	Tomato	plastid	47.1	47.87
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	46.45	47.84
PGSC0003DMT400057639	Potato	nucleus	50.65	47.58
EES11661	Sorghum	nucleus	46.13	47.51
PGSC0003DMT400033344	Potato	nucleus	47.1	47.1
GSMUA_Achr11P...	Banana	nucleus	48.06	46.42
VIT_00s0370g00020.t01	Wine grape	nucleus	56.13	46.4
TraesCSU01G101000.3	Wheat	nucleus	46.13	46.13
GSMUA_Achr5P20770_001	Banana	cytosol	47.42	46.08
Zm00001d001814_P001	Maize	nucleus	43.87	45.48
Zm00001d026630_P001	Maize	plasma membrane	44.19	44.92
KRH26934	Soybean	nucleus	46.77	44.89
GSMUA_Achr4P26100_001	Banana	nucleus	50.0	44.41
KRH22403	Soybean	nucleus	46.77	44.21
TraesCS2B01G594200.1	Wheat	nucleus	43.87	43.87
TraesCS2D01G564200.1	Wheat	nucleus	43.87	43.87
TraesCS2A01G590000.2	Wheat	nucleus	43.87	43.73
GSMUA_AchrUn_...	Banana	nucleus	49.68	41.73
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	44.52	39.88
GSMUA_Achr8P11240_001	Banana	nucleus	48.39	38.07
HORVU7Hr1G119590.1	Barley	nucleus, plastid	43.87	37.57

Protein Annotations

EntrezGene:100820255	MapMan:22.1.1.2	EMBL:ACUP02004653	InterPro:Clathrin_L-chain	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G195000
GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0005905	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030125	GO:GO:0030130
GO:GO:0030132	GO:GO:0030659	GO:GO:0031410	GO:GO:0032050	GO:GO:0072583	UniProt:I1KLI2
EnsemblPlants:KRH50011	ProteinID:KRH50011	ProteinID:KRH50011.1	PFAM:PF01086	PANTHER:PTHR10639	PANTHER:PTHR10639:SF7
UniParc:UPI0002337EF0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:36346251..36349084

Molecular Weight (calculated)

34091.4 Da

IEP (calculated)

4.998

GRAVY (calculated)

-1.014

Length

310 amino acids

Sequence
(BLAST)

001: MASTFDAFTV DDDHFAAPSA ADTFSGYGDF STFPSDDVPV DHAATAASPE IFGFSDPDPG YSPSPFEQVH ENGNGNGTVN GYGDGVFVSD GPVLPPPEEV
101: EPEEGHALRE WRRQNAIQLE EKEKREKEMR LKIIEEAEEY KVAFYEKRKL NVETNKVQNR EREKLYLANQ EKFHKVADKN YWKAIGEIIP REVPNIEKKR
201: SKKDQENKPS ITVVQGPKPG KPTDLSRLRQ ILLKLKHTPP AHMIPPPPAP AKDAKDGKDG KDGKETASKA NGSAPDAAPG SQPKDATTNN GTADLPQKEA
301: PPPPEEQSST

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.