Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P23720_001 | Banana | nucleus | 56.12 | 29.57 |
| GSMUA_Achr1P17650_001 | Banana | nucleus | 50.0 | 27.68 |
| TraesCSU01G218200.1 | Wheat | nucleus | 50.0 | 23.56 |
| GSMUA_Achr5P20770_001 | Banana | cytosol | 61.22 | 18.81 |
| GSMUA_Achr11P... | Banana | nucleus | 60.2 | 18.38 |
| Os06t0731800-01 | Rice | nucleus, plasma membrane | 54.08 | 18.21 |
| GSMUA_Achr3P14280_001 | Banana | nucleus | 53.06 | 18.18 |
| KRH20480 | Soybean | endoplasmic reticulum | 56.12 | 18.15 |
| KRH50011 | Soybean | nucleus | 56.12 | 17.74 |
| KRH21478 | Soybean | nucleus | 55.1 | 17.25 |
| GSMUA_Achr4P26100_001 | Banana | nucleus | 60.2 | 16.91 |
| Zm00001d014898_P001 | Maize | plasma membrane | 48.98 | 16.9 |
| KRH10839 | Soybean | nucleus | 55.1 | 16.77 |
| Solyc03g006510.2.1 | Tomato | plastid | 52.04 | 16.72 |
| EER89016 | Sorghum | nucleus | 47.96 | 16.49 |
| PGSC0003DMT400033344 | Potato | nucleus | 51.02 | 16.13 |
| TraesCSU01G101000.3 | Wheat | nucleus | 51.02 | 16.13 |
| GSMUA_AchrUn_... | Banana | nucleus | 60.2 | 15.99 |
| KRH26934 | Soybean | nucleus | 52.04 | 15.79 |
| Os04t0679100-01 | Rice | extracellular, plasma membrane, plastid | 47.96 | 15.61 |
| Bra031138.1-P | Field mustard | nucleus | 50.0 | 15.51 |
| CDY13859 | Canola | nucleus | 50.0 | 15.51 |
| GSMUA_Achr8P11240_001 | Banana | nucleus | 62.24 | 15.48 |
| CDX81980 | Canola | nucleus | 50.0 | 15.36 |
| KRH22403 | Soybean | nucleus | 51.02 | 15.24 |
| VIT_00s0370g00020.t01 | Wine grape | nucleus | 57.14 | 14.93 |
| Solyc02g078540.2.1 | Tomato | nucleus | 50.0 | 14.89 |
| PGSC0003DMT400057639 | Potato | nucleus | 50.0 | 14.85 |
| CDY31939 | Canola | nucleus | 28.57 | 14.14 |
| HORVU7Hr1G119590.1 | Barley | nucleus, plastid | 52.04 | 14.09 |
| AT2G20760.1 | Thale cress | nucleus | 47.96 | 13.91 |
| TraesCS2B01G594200.1 | Wheat | nucleus | 43.88 | 13.87 |
| TraesCS2D01G564200.1 | Wheat | nucleus | 43.88 | 13.87 |
| TraesCS2A01G590000.2 | Wheat | nucleus | 43.88 | 13.83 |
| Bra036500.1-P | Field mustard | nucleus | 29.59 | 13.81 |
| Zm00001d026630_P001 | Maize | plasma membrane | 42.86 | 13.77 |
| Zm00001d001814_P001 | Maize | nucleus | 41.84 | 13.71 |
| EES11661 | Sorghum | nucleus | 41.84 | 13.62 |
| HORVU2Hr1G118930.1 | Barley | cytosol, mitochondrion, nucleus | 44.9 | 12.72 |
| Solyc07g054180.2.1 | Tomato | nucleus | 52.04 | 12.26 |
| PGSC0003DMT400047261 | Potato | extracellular | 50.0 | 11.24 |
| CDY05790 | Canola | nucleus | 10.2 | 5.95 |
Protein Annotations
| MapMan:22.1.1.2 | InterPro:Clathrin_L-chain | ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 |
| EnsemblPlantsGene:GSMUA_Achr2G18530_001 | EnsemblPlants:GSMUA_Achr2P18530_001 | EnsemblPlants:GSMUA_Achr2T18530_001 | UniProt:M0S944 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF8 |
| UniParc:UPI000295C4BA | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G18530_001]
Coordinates
chr2:+:18913246..18915943
Molecular Weight (calculated)
11687.9 Da
IEP (calculated)
9.873
GRAVY (calculated)
-1.166
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MDDETSVVFV MEREHRLAAA IYKQAFYEKG KLNCETNKLQ NREREKLYLS NREKFHTDAD KQYWKAIAKL ITNEIANIEK RGKKEEQKPS QTKAWKAH
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.