CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13859	Canola	nucleus	80.88	81.65
GSMUA_Achr9P23720_001	Banana	nucleus	37.62	64.52
GSMUA_Achr1P17650_001	Banana	nucleus	33.86	61.02
AT2G20760.1	Thale cress	nucleus	64.58	60.95
CDX69783	Canola	nucleus	34.8	58.73
CDX97081	Canola	nucleus	31.35	54.35
CDY31939	Canola	nucleus	33.23	53.54
TraesCSU01G218200.1	Wheat	nucleus	34.48	52.88
CDY07049	Canola	nucleus	37.3	51.29
CDY61712	Canola	nucleus	38.56	50.62
GSMUA_Achr2P18530_001	Banana	cytosol	15.36	50.0
Os06t0731800-01	Rice	nucleus, plasma membrane	45.14	49.48
Zm00001d014898_P001	Maize	plasma membrane	43.57	48.94
CDY07629	Canola	nucleus	39.81	48.11
KRH22403	Soybean	nucleus	49.22	47.87
EER89016	Sorghum	nucleus	42.32	47.37
CDY60337	Canola	nucleus	39.19	47.35
TraesCSU01G101000.3	Wheat	nucleus	45.77	47.1
KRH26934	Soybean	nucleus	47.65	47.06
GSMUA_Achr3P14280_001	Banana	nucleus	42.01	46.85
GSMUA_Achr11P...	Banana	nucleus	46.08	45.79
GSMUA_Achr5P20770_001	Banana	cytosol	45.77	45.77
Os04t0679100-01	Rice	extracellular, plasma membrane, plastid	42.95	45.51
CDX95307	Canola	nucleus	35.74	45.42
TraesCS2B01G594200.1	Wheat	nucleus	43.89	45.16
Zm00001d001814_P001	Maize	nucleus	42.01	44.82
TraesCS2A01G590000.2	Wheat	nucleus	43.57	44.69
TraesCS2D01G564200.1	Wheat	nucleus	42.63	43.87
EES11661	Sorghum	nucleus	41.38	43.85
CDY23170	Canola	nucleus	35.11	43.75
GSMUA_Achr4P26100_001	Banana	nucleus	46.08	42.12
CDY05790	Canola	nucleus	21.94	41.67
HORVU2Hr1G118930.1	Barley	cytosol, mitochondrion, nucleus	44.2	40.75
Zm00001d026630_P001	Maize	plasma membrane	38.56	40.33
GSMUA_AchrUn_...	Banana	nucleus	45.77	39.57
PGSC0003DMT400047261	Potato	extracellular	51.41	37.61
HORVU7Hr1G119590.1	Barley	nucleus, plastid	42.63	37.57
Solyc07g054180.2.1	Tomato	nucleus	48.28	37.02
GSMUA_Achr8P11240_001	Banana	nucleus	44.83	36.29
CDY20508	Canola	nucleus	36.99	25.0

Protein Annotations

MapMan:22.1.1.2	GO:A0A078CYT3	EnsemblPlants:CDX81980	ProteinID:CDX81980	ProteinID:CDX81980.1	InterPro:Clathrin_L-chain
ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0016020	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	EnsemblPlantsGene:GSBRNA2T00136955001	PFAM:PF01086
PANTHER:PTHR10639	PANTHER:PTHR10639:SF8	UniParc:UPI0004EEDD78	SEG:seg	:	:

Description

BnaC08g36210D

Coordinates

chrLK031826:-:1773728..1775342

Molecular Weight (calculated)

34973.5 Da

IEP (calculated)

5.809

GRAVY (calculated)

-1.180

Length

319 amino acids

Sequence
(BLAST)

001: MATFDDGDFP AAQTHSPTEH DDSFMSYENF SEAPPSGGFS SFNGDGSENP ASPNGYGFAA ASSPNGNGDA GIFASDGPTL PDPNEMREEG FQRREWRRQN
101: ALHLEEKEKK EKEMRNQIIA EAEEYKKAFY EKREKTIETN KADNREREKL YWVNQEKFHK EVDKHYWKAI AELIPREVPN IEKKRGKKDP DKKPSVMVIQ
201: GPKPGKPTDL GRMRQIFLKL KTNPPPHMMP PPPPAKDAKD AKDGKDAKGG KDAKEVKDGK PAAEKKAAEA ETKAAEEKPA SPAKEASAET AKPEAAAAAA
301: AGSGEGEKPV VEAEGAKAE

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.