Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69783 | Canola | nucleus | 90.76 | 88.36 |
| CDY07049 | Canola | nucleus | 73.91 | 58.62 |
| CDY61712 | Canola | nucleus | 75.54 | 57.2 |
| CDY60337 | Canola | nucleus | 77.72 | 54.17 |
| CDY07629 | Canola | nucleus | 76.63 | 53.41 |
| CDX95307 | Canola | nucleus | 54.35 | 39.84 |
| CDY23170 | Canola | nucleus | 54.35 | 39.06 |
| VIT_13s0067g00550.t01 | Wine grape | nucleus | 60.33 | 34.8 |
| CDX81980 | Canola | nucleus | 54.35 | 31.35 |
| CDY13859 | Canola | nucleus | 52.17 | 30.38 |
| CDY20508 | Canola | nucleus | 77.72 | 30.3 |
| CDY31939 | Canola | nucleus | 30.98 | 28.79 |
| CDY05790 | Canola | nucleus | 20.11 | 22.02 |
Protein Annotations
| MapMan:22.1.1.2 | GO:A0A078E7A7 | EnsemblPlants:CDX97081 | ProteinID:CDX97081 | ProteinID:CDX97081.1 | InterPro:Clathrin_L-chain |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 | EnsemblPlantsGene:GSBRNA2T00104061001 | PFAM:PF01086 |
| PANTHER:PTHR10639 | PANTHER:PTHR10639:SF19 | UniParc:UPI0004EEE8C3 | SEG:seg | : | : |
Description
BnaC09g45440D
Coordinates
chrLK031897:+:539848..540402
Molecular Weight (calculated)
21061.0 Da
IEP (calculated)
8.424
GRAVY (calculated)
-0.974
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSEMSVYGS YSNGDGFFGS NGGHDGPILP PPSEMESDEG TALREWRRQN AIQLEEKEKR EKELWNQIIE QANQFKEEFH KKRELTCENN KAANREKEKM
101: YVETQEKLYA EASKNYWKAI AELVPKEVPT IEMESGPKKA SISVIQGPKP SKPTHLSRMR QILLKLKQHP KNVQTKPTEA VVAA
101: YVETQEKLYA EASKNYWKAI AELVPKEVPT IEMESGPKKA SISVIQGPKP SKPTHLSRMR QILLKLKQHP KNVQTKPTEA VVAA
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.