CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008989.1-P	Field mustard	nucleus	96.83	96.83
CDX97081	Canola	nucleus	88.36	90.76
CDY07049	Canola	nucleus	74.6	60.78
CDY61712	Canola	nucleus	76.19	59.26
CDY60337	Canola	nucleus	79.37	56.82
CDY07629	Canola	nucleus	78.84	56.44
CDX95307	Canola	nucleus	54.5	41.04
CDY23170	Canola	nucleus	55.03	40.62
VIT_13s0067g00550.t01	Wine grape	nucleus	64.02	37.93
CDX81980	Canola	nucleus	58.73	34.8
CDY13859	Canola	nucleus	56.08	33.54
CDY31939	Canola	nucleus	33.33	31.82
CDY20508	Canola	nucleus	77.78	31.14
CDY05790	Canola	nucleus	20.63	23.21

Protein Annotations

MapMan:22.1.1.2	GO:A0A078C414	EnsemblPlants:CDX69783	ProteinID:CDX69783	ProteinID:CDX69783.1	InterPro:Clathrin_L-chain
ncoils:Coil	GO:GO:0003674	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0016020	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	EnsemblPlantsGene:GSBRNA2T00135830001	PFAM:PF01086
PANTHER:PTHR10639	PANTHER:PTHR10639:SF19	UniParc:UPI0004EE14A3	SEG:seg	:	:

Description

BnaA10g21320D

Coordinates

chrLK031790:-:1829013..1829582

Molecular Weight (calculated)

21777.7 Da

IEP (calculated)

8.916

GRAVY (calculated)

-1.144

Length

189 amino acids

Sequence
(BLAST)

001: MFSEMSVYGS YSNGDGIFGS NGGHDGPILP PPSAMESDEG TALREWRRQN VIHLEEKEKR EKELWNQIIE EANQFKEEFH KKREQTCENN KAANREKEKL
101: YVENQEKFYA EASKNYWKAI AELVPKEVPT IEKRRGKKEE DPKKPSISVI QGPKPDKPTD LSRMRQILLK LKQHPKNVQT KPTEAVAAA

Best Arabidopsis Sequence Match ( AT2G20760.1 )
(BLAST)

001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE

Arabidopsis Description

Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.