Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69783 | Canola | nucleus | 96.83 | 96.83 |
| Bra017039.1-P | Field mustard | nucleus | 72.49 | 59.05 |
| Bra000163.1-P | Field mustard | nucleus | 78.31 | 56.06 |
| Bra033472.1-P | Field mustard | nucleus | 52.38 | 39.44 |
| VIT_13s0067g00550.t01 | Wine grape | nucleus | 63.49 | 37.62 |
| Bra031138.1-P | Field mustard | nucleus | 56.08 | 33.54 |
| Bra036500.1-P | Field mustard | nucleus | 33.33 | 30.0 |
Protein Annotations
| MapMan:22.1.1.2 | EnsemblPlantsGene:Bra008989 | EnsemblPlants:Bra008989.1 | EnsemblPlants:Bra008989.1-P | InterPro:Clathrin_L-chain | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005886 | GO:GO:0005905 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 | GO:GO:0030659 | GO:GO:0031410 |
| UniProt:M4CXP2 | PFAM:PF01086 | PANTHER:PTHR10639 | PANTHER:PTHR10639:SF19 | UniParc:UPI0002544306 | SEG:seg |
Description
AT2G40060 (E=6e-064) | protein binding / structural molecule
Coordinates
chrA10:-:14742501..14743070
Molecular Weight (calculated)
21854.7 Da
IEP (calculated)
8.417
GRAVY (calculated)
-1.194
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSEMSVYGS YSNGDGFFGS NGGHDGPLLQ PPSEIESDEG TALREWRRQN AIHLEEKEKR EKELWNQIIE EANQFKEEFH KKREQTCENN KAANREKEKL
101: YVENQEKFYA EASKNYWKAI AELVPKEVPT IEKRRGKKEE DPKKPSISVI QGPKPDKPTD LSRMRQILLK LKQHPKNVQT KPTEAVAAA
101: YVENQEKFYA EASKNYWKAI AELVPKEVPT IEKRRGKKEE DPKKPSISVI QGPKPDKPTD LSRMRQILLK LKQHPKNVQT KPTEAVAAA
001: MSAFEDDSFV ILNDDASESV PVSGSFDATD SFSAFDGSLQ VEDSVDDVFA APSSDYGAYS NGDGIFGSNG DHDGPILPPP SEMESDEGFA LREWRRQNAI
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
101: QLEEKEKREK ELLKQIIEEA DQYKEEFHKK IEVTCENNKA ANREKEKLYL ENQEKFYAES SKNYWKAIAE LVPKEVPTIE KRRGKKEQQD PKKPTVSVIQ
201: GPKPGKPTDL TRMRQILVKL KHNPPSHLKL TSQPPSEEAA APPKNVPETK PTEAVTAA
Arabidopsis Description
CLC2Clathrin light chain [Source:UniProtKB/TrEMBL;Acc:A0A178W0Q3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.