Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017039.1-P | Field mustard | nucleus | 97.41 | 97.41 |
| CDY61712 | Canola | nucleus | 93.53 | 89.3 |
| CDY07629 | Canola | nucleus | 87.07 | 76.52 |
| CDX69783 | Canola | nucleus | 60.78 | 74.6 |
| CDX97081 | Canola | nucleus | 58.62 | 73.91 |
| CDY60337 | Canola | nucleus | 83.62 | 73.48 |
| AT2G40060.1 | Thale cress | nucleus | 72.41 | 65.12 |
| CDX95307 | Canola | nucleus | 46.55 | 43.03 |
| CDY23170 | Canola | nucleus | 46.55 | 42.19 |
| VIT_13s0067g00550.t01 | Wine grape | nucleus | 57.33 | 41.69 |
| CDX81980 | Canola | nucleus | 51.29 | 37.3 |
| CDY13859 | Canola | nucleus | 49.57 | 36.39 |
| CDY20508 | Canola | nucleus | 73.28 | 36.02 |
| CDY31939 | Canola | nucleus | 28.45 | 33.33 |
| CDY05790 | Canola | nucleus | 20.69 | 28.57 |
Protein Annotations
| MapMan:22.1.1.2 | GO:A0A078F2C9 | EnsemblPlants:CDY07049 | ProteinID:CDY07049 | ProteinID:CDY07049.1 | InterPro:Clathrin_L-chain |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 | EnsemblPlantsGene:GSBRNA2T00123367001 | PFAM:PF01086 |
| PANTHER:PTHR10639 | PANTHER:PTHR10639:SF19 | UniParc:UPI0004EEA72E | SEG:seg | : | : |
Description
BnaA04g22660D
Coordinates
chrLK031974:+:844060..845587
Molecular Weight (calculated)
25964.3 Da
IEP (calculated)
5.024
GRAVY (calculated)
-0.924
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVFDDSFVI VEDDASESVP VSASLDDSID DVFAAPSSDY AAYSNGDGPI LPPPSEMESD EGTALREWRR QNANQLEEKE KREKELRNQV IEEANQFKED
101: FHKKRELACE NNKAANREKE KLYVETQEKF YAEASKNYWK AIAELVPKEV PALEKRRGKK EQEDAKKATV SVIQGPKPGK PTDLARMRQI LLKLKQNPPA
201: HLKLAPQQPP AEAAAPPKNV PETKHTEAVA AA
101: FHKKRELACE NNKAANREKE KLYVETQEKF YAEASKNYWK AIAELVPKEV PALEKRRGKK EQEDAKKATV SVIQGPKPGK PTDLARMRQI LLKLKQNPPA
201: HLKLAPQQPP AEAAAPPKNV PETKHTEAVA AA
001: MATFDDGDFP AQTHSPSEHE DFGGYDNFSE AQQPPTQHQS GGFSSFNGDP ASPNGYGFGA SSPNHDFSSP FESSVNDANG NGGGSGGDAI FASDGPILPD
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
101: PNEMREEGFQ RREWRRLNTI HLEEKEKKEK EMRNQIITEA EDFKKAFYEK RDKTIETNKT DNREKEKLYW ANQEKFHKEV DKHYWKAIAE LIPREVPNIE
201: KKRGKKDPDK KPSVNVIQGP KPGKPTDLGR MRQIFLKLKT NPPPHMMPPP PPAKDAKDGK DAKDGKDAKT GKDGKDAKGG KDAKDLKDGK PADPKVTEEK
301: RPSPAKDASV ETAKPDAAAS GEGEKPVAVT EAEGTKAE
Arabidopsis Description
Clathrin light chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.