CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67529
CDX69650
CDX74635
CDX93553
CDX95050
CDX97497
CDX99702
CDY04455
CDY09784
CDY13364
CDY27283
CDY27661
CDY31137
CDY44550
CDY45889
CDY47297

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42080.1	CDX93553	AT1G08560.1	19959995
AT5G42080.1	CDX95050	AT1G08560.1	19959995
AT5G42080.1	CDX97497	AT1G08560.1	19959995
AT5G42080.1	CDY31137	AT1G08560.1	19959995
AT5G42080.1	CDY04455	AT1G59610.1	20231465
AT5G42080.1	CDY27283	AT1G59610.1	20231465
AT5G42080.1	CDY44550	AT1G59610.1	20231465
AT5G42080.1	CDY45889	AT1G59610.1	20231465
AT5G42080.1	CDX69650	AT5G13300.1	15923323
AT5G42080.1	CDY09784	AT5G13300.1	15923323
AT5G42080.1	CDX74635	AT5G35750.1	18642946
AT5G42080.1	CDY47297	AT5G35750.1	18642946
AT5G42080.1	CDX67529	AT5G42080.1	19144001
AT5G42080.1	CDX99702	AT5G42080.1	19144001
AT5G42080.1	CDY13364	AT5G42080.1	19144001
AT5G42080.1	CDY27661	AT5G42080.1	19144001
AT5G42080.1	CDX67529	AT5G42080.1	20231465
AT5G42080.1	CDX99702	AT5G42080.1	20231465
AT5G42080.1	CDY13364	AT5G42080.1	20231465
AT5G42080.1	CDY27661	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27661	Canola	cytosol	99.02	99.02
CDX67529	Canola	cytosol	98.85	98.85
Bra025448.1-P	Field mustard	cytosol	94.43	98.8
CDY13364	Canola	cytosol	98.69	98.69
AT5G42080.1	Thale cress	cytosol	97.7	97.7
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	86.72	86.72
KRH77654	Soybean	endoplasmic reticulum	86.72	86.72
KRH60047	Soybean	endoplasmic reticulum	85.74	85.74
KRH41321	Soybean	endoplasmic reticulum, nucleus	85.74	85.74
GSMUA_Achr1P04880_001	Banana	cytosol	85.25	85.25
Os05t0556100-01	Rice	plasma membrane	83.77	83.91
EES19921	Sorghum	cytosol	83.61	83.74
TraesCS1B01G411700.3	Wheat	cytosol	82.3	82.43
CDY25074	Canola	cytosol	82.3	82.3
CDX67862	Canola	cytosol	82.3	82.3
TraesCS1A01G385400.2	Wheat	cytosol, golgi, nucleus, unclear	81.97	82.1
TraesCS1D01G393000.2	Wheat	cytosol	81.97	82.1
EES01270	Sorghum	cytosol	80.98	81.12
Os01t0681100-01	Rice	cytosol, plasma membrane	23.93	79.35
Zm00001d009504_P002	Maize	cytosol	83.77	77.9
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	83.61	76.12
HORVU1Hr1G084970.2	Barley	plasma membrane	82.3	74.26
CDY33737	Canola	cytosol	66.72	66.29
CDX81675	Canola	cytosol	66.72	66.29
CDY41188	Canola	cytosol	67.7	66.08
CDX71832	Canola	cytosol	67.7	66.08
CDY52026	Canola	cytosol	66.39	65.96
CDX84001	Canola	cytosol	66.39	65.96
CDY42672	Canola	cytosol	66.56	64.96
CDX89053	Canola	cytosol	66.56	64.86
CDY23444	Canola	cytosol	63.61	62.78
CDY30477	Canola	cytosol	63.44	62.62
CDY35022	Canola	cytosol	28.52	60.63
CDY35023	Canola	cytosol	32.3	56.77
TraesCS6B01G443600.1	Wheat	cytosol	40.98	47.8
TraesCS6D01G385300.1	Wheat	cytosol	37.05	45.66
CDX94910	Canola	cytosol	21.8	28.0
CDY47217	Canola	cytosol	22.13	26.26
CDY53048	Canola	cytosol	21.48	26.2
CDY28314	Canola	cytosol	34.59	26.18
CDX68994	Canola	cytosol	34.75	26.08
CDY46101	Canola	cytosol	34.26	26.03
CDY48440	Canola	cytosol	34.26	25.9
CDY47216	Canola	cytosol	22.79	25.84
CDX72418	Canola	cytosol	34.43	25.27
CDX75370	Canola	cytosol	34.75	25.24
CDY36456	Canola	cytosol	7.38	24.19
CDY31035	Canola	cytosol	24.75	24.12
CDY20643	Canola	cytosol	24.59	23.7
CDY34120	Canola	cytosol	24.92	23.24
CDY53046	Canola	cytosol	25.57	23.15
CDY02039	Canola	cytosol, plastid	21.15	23.08
CDY24536	Canola	cytosol	24.59	22.94
CDY23281	Canola	cytosol	14.43	22.22
CDY29721	Canola	cytosol	5.41	21.29
CDY34117	Canola	cytosol	17.87	20.64
CDY03289	Canola	cytosol	17.87	20.64
CDX93442	Canola	cytosol	28.52	19.1
CDY34897	Canola	cytosol	28.52	19.02
CDY45889	Canola	cytosol	28.2	18.7
CDY04455	Canola	cytosol	27.87	18.52
CDY27283	Canola	cytosol	22.95	18.35
CDY44550	Canola	cytosol	28.2	17.84
CDX94909	Canola	mitochondrion	19.51	16.37
CDY25877	Canola	plastid	20.66	15.31
CDY33414	Canola	cytosol	19.34	15.19
CDY42203	Canola	cytosol	19.34	15.01
CDY53047	Canola	cytosol	2.3	14.43
CDY50514	Canola	plastid	16.72	13.32
CDY24530	Canola	cytosol, nucleus, plasma membrane	11.31	10.88
CDY29720	Canola	cytosol, extracellular	5.74	8.18

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	GO:A0A078EF82	EnsemblPlants:CDX99702	ProteinID:CDX99702
ProteinID:CDX99702.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED
InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00108270001	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF58	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	UniParc:UPI0004EE69E8	SEG:seg	:	:	:

Description

BnaC04g34590D

Coordinates

chrLK031912:+:1248927..1253040

Molecular Weight (calculated)

68226.3 Da

IEP (calculated)

8.512

GRAVY (calculated)

-0.288

Length

610 amino acids

Sequence
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGAREYAEFL HLPRKKFHDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL VDLPGLTKVA VEGQSENIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGERTFGVL TKIDLMDKGT DAVEILEGKS FKLKYPWVGV VNRSQADINK NVDMIAARRR EREYFSNTKE YRHLAHKMGS EHLAKMLSKH LEHVIKSRIP
301: GIQSLINKTV LELESELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDAE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Arabidopsis Description

DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.