Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31137 | Canola | cytosol | 95.05 | 94.74 |
| CDX95050 | Canola | cytosol | 90.43 | 89.25 |
| CDX93553 | Canola | cytosol | 90.1 | 88.93 |
| AT1G08560.1 | Thale cress | cytosol | 83.83 | 81.94 |
| VIT_04s0008g02770.t01 | Wine grape | cytosol | 74.59 | 72.67 |
| PGSC0003DMT400041982 | Potato | cytosol | 72.61 | 70.74 |
| Solyc06g053760.2.1 | Tomato | cytosol | 71.62 | 69.77 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 55.12 | 68.16 |
| KRH08461 | Soybean | cytosol | 68.98 | 64.91 |
| KRH70119 | Soybean | cytosol | 67.33 | 64.15 |
| TraesCS4B01G067100.1 | Wheat | cytosol | 33.0 | 61.35 |
| KXG37622 | Sorghum | cytosol | 61.06 | 59.29 |
| Zm00001d013323_P001 | Maize | cytosol | 60.07 | 57.96 |
| Zm00001d033919_P001 | Maize | plasma membrane | 59.74 | 57.83 |
| Os03t0736500-01 | Rice | cytosol, plasma membrane | 59.08 | 57.56 |
| TraesCS4D01G066100.1 | Wheat | cytosol | 57.43 | 55.06 |
| TraesCS4B01G067200.1 | Wheat | cytosol | 56.44 | 54.46 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 56.44 | 54.11 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 57.43 | 47.93 |
| CDY34843 | Canola | cytosol | 43.23 | 43.96 |
| CDY20986 | Canola | cytosol | 42.9 | 43.62 |
| CDY34656 | Canola | cytosol | 42.9 | 43.62 |
| CDY19350 | Canola | cytosol | 42.9 | 43.62 |
| CDX97943 | Canola | cytosol | 42.9 | 43.62 |
| CDY21160 | Canola | cytosol | 19.14 | 43.61 |
| CDY70107 | Canola | cytosol | 42.57 | 43.29 |
| CDY48554 | Canola | cytosol | 43.56 | 43.28 |
| CDY21958 | Canola | cytosol | 43.23 | 42.95 |
| CDY50666 | Canola | cytosol | 18.48 | 41.48 |
| CDY51747 | Canola | cytosol | 18.15 | 40.74 |
| CDY46302 | Canola | cytosol | 37.95 | 39.93 |
| CDY70958 | Canola | cytosol | 43.56 | 39.64 |
| CDX73851 | Canola | cytosol | 43.23 | 39.22 |
| CDY20921 | Canola | cytosol | 36.96 | 39.16 |
| CDY01061 | Canola | cytosol, plastid | 43.23 | 39.1 |
| CDY29223 | Canola | cytosol | 36.96 | 39.02 |
| CDY08492 | Canola | cytosol | 43.23 | 38.64 |
| CDY25157 | Canola | cytosol | 25.41 | 38.12 |
| CDY29963 | Canola | cytosol | 36.96 | 36.13 |
| CDY23212 | Canola | cytosol | 40.26 | 35.57 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 38.94 | 35.12 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 38.28 | 34.73 |
| CDY21161 | Canola | cytosol | 18.48 | 31.28 |
| CDY51748 | Canola | cytosol | 17.82 | 30.51 |
| CDY50665 | Canola | cytosol | 16.83 | 29.31 |
| TraesCS6A01G147100.1 | Wheat | cytosol | 27.06 | 26.8 |
| TraesCS6B01G175300.1 | Wheat | cytosol | 27.06 | 26.8 |
| TraesCS6D01G136400.1 | Wheat | cytosol | 27.06 | 26.8 |
| CDX95336 | Canola | cytosol | 9.24 | 26.67 |
| Zm00001d035331_P001 | Maize | cytosol | 26.07 | 26.51 |
| HORVU6Hr1G028850.1 | Barley | cytosol | 26.4 | 26.14 |
| OQU78880 | Sorghum | cytosol | 26.4 | 25.97 |
| Os12t0192300-00 | Rice | plasma membrane | 27.39 | 23.85 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:13.4.2.3.1 | MapMan:22.7.1.1 | GO:A0A078E8Y1 | EnsemblPlants:CDX97497 |
| ProteinID:CDX97497 | ProteinID:CDX97497.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | EnsemblPlantsGene:GSBRNA2T00104701001 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF91 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE |
| SUPFAM:SSF47661 | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EEAEF4 | SEG:seg |
Description
BnaC08g13620D
Coordinates
chrLK031899:-:1302489..1303400
Molecular Weight (calculated)
34618.8 Da
IEP (calculated)
6.336
GRAVY (calculated)
-0.492
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTKSFT SYVDLKKAAM KDLESGPDLE MSNKTDENLS SFLEEAEKVK SEMALIEAAL SRISRYNDES KSAHRSESVK SLRDKISNEI VSGLRKAKSI
101: KTTLEEMDRA NREIKRLSGT NPVYRSRVAV TNGLRKKLKE VMMEFQELRQ RMMSEYKETV ERRYFTVTGE RPDEEMIEKI VTDGGEEFLT RAIQEHGRGK
201: VLETVVEIQD SHDAAKEIEK SLLELHQVFL DMAVMVEAQG EQMDEIEHHV MNAGHYVKDG AKELKTAKNH QRSSRKWMCI GVIVLLLIIL VVVIPIITSF
301: TSS
101: KTTLEEMDRA NREIKRLSGT NPVYRSRVAV TNGLRKKLKE VMMEFQELRQ RMMSEYKETV ERRYFTVTGE RPDEEMIEKI VTDGGEEFLT RAIQEHGRGK
201: VLETVVEIQD SHDAAKEIEK SLLELHQVFL DMAVMVEAQG EQMDEIEHHV MNAGHYVKDG AKELKTAKNH QRSSRKWMCI GVIVLLLIIL VVVIPIITSF
301: TSS
001: MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
Arabidopsis Description
KNSYP111 [Source:UniProtKB/TrEMBL;Acc:A0A178WAC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.